Plant FIBer expression Database

Lus10022985 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35320 104 / 1e-28 unknown protein
AT2G17300 71 / 5e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001621
[exp]
242 / 6e-83 AT4G35320 102 / 1e-28 unknown protein
Lus10026561
[exp]
179 / 6e-58 AT4G35320 117 / 2e-34 unknown protein
Lus10013844
[exp]
117 / 3e-34 AT4G35320 91 / 5e-25 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G207500
[exp]
154 / 3e-48 AT4G35320 110 / 1e-31 unknown protein
Potri.009G168800
[exp]
146 / 5e-45 AT4G35320 113 / 1e-32 unknown protein
PFAM info
Representative CDS sequence
>Lus10022985 pacid=23146121 polypeptide=Lus10022985 locus=Lus10022985.g ID=Lus10022985.BGIv1.0 annot-version=v1.0
ATGAGTTCAATCCTCCACAAGAGCCGCTCCGCCGCACTCCCAGTCTCCCAGCAGCCTGAAGGAGGTGAACAGGGAGGCGTACTCCGGAGGAGACTCTCTT
CCCTATCCCTAAACATCCAGCCAATCGCCTCCCCTGCAACGACTTGGGCCATCCACAGATCCAAGTCCCTGTCGGCCATGGGCCAGCACGCCGGCGACTC
CATCAAGACCTGGTGGGGTTGGGGTCTGGCTTGGATCTTGTCTAAGAAGCCTGTCTTCGCTCAAGATCTGGAGATGAACGAGGAGGAGGCCAAGGCCTTG
GGGTCCCAGAACAGAGGCAGCTGGTTCCACATCCTCTACAAGCTCAAGTCCGAGATCACCAAAGCTATCCTCACTAGATCTGATAAAGCAGCTGGCCTCC
CACAGACTTACAGGGGGGTATTGGTGGTGGAAACGCAAAAAATGGAAGGTGATTATCATGGGATCCAGATTCAAGATCGGAAGAAAGAAGAACATCAATA
CTACCTACCTGTTATTATTCAAATTTGTTTATCCGTGGATTCATTACTTGTTGCTATGATTCGTTTTGTTATTTGA
AA sequence
>Lus10022985 pacid=23146121 polypeptide=Lus10022985 locus=Lus10022985.g ID=Lus10022985.BGIv1.0 annot-version=v1.0
MSSILHKSRSAALPVSQQPEGGEQGGVLRRRLSSLSLNIQPIASPATTWAIHRSKSLSAMGQHAGDSIKTWWGWGLAWILSKKPVFAQDLEMNEEEAKAL
GSQNRGSWFHILYKLKSEITKAILTRSDKAAGLPQTYRGVLVVETQKMEGDYHGIQIQDRKKEEHQYYLPVIIQICLSVDSLLVAMIRFVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G35320 unknown protein Lus10022985
[exp]
0 1
AT1G02000 GAE2 UDP-D-glucuronate 4-epimerase ... Lus10027195
[exp]
1.4 0.9129
AT1G21000 PLATZ transcription factor fam... Lus10035554
[exp]
1.7 0.8917
AT1G27200 Domain of unknown function (DU... Lus10036676
[exp]
2.0 0.8789
AT1G07590 Tetratricopeptide repeat (TPR)... Lus10042757
[exp]
2.6 0.8395
AT4G35320 unknown protein Lus10001621
[exp]
2.8 0.9011
AT1G75800 Pathogenesis-related thaumatin... Lus10033136
[exp]
3.5 0.8396
AT5G55960 unknown protein Lus10022565
[exp]
4.9 0.8369
AT1G29050 TBL38 TRICHOME BIREFRINGENCE-LIKE 38... Lus10013929
[exp]
5.3 0.8246
AT3G62060 Pectinacetylesterase family pr... Lus10007200
[exp]
6.7 0.8200
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10032854
[exp]
8.1 0.8285

Lus10022985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.