Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 1003 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT3G51490 860 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G20840 789 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT2G35740 147 / 4e-37 ATINT3 nositol transporter 3 (.1) AT1G30220 143 / 7e-36 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 138 / 4e-34 ATINT4 inositol transporter 4 (.1) AT2G43330 124 / 6e-30 ATINT1 inositol transporter 1 (.1) AT3G18830 122 / 4e-29 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT5G16150 122 / 8e-29 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT4G36670 119 / 2e-28 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001386 [exp] 1317 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 1312 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 1174 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10030726 [exp] 924 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 899 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 734 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10010886 [exp] 717 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10017561 [exp] 145 / 2e-36 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 143 / 1e-35 AT4G16480 823 / 0.0 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168500 [exp] 1093 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 1064 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G255400 [exp] 988 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.002G006200 [exp] 979 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G098900 [exp] 838 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.006G015300 [exp] 140 / 6e-35 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 136 / 1e-33 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 130 / 2e-31 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032200 [exp] 129 / 2e-31 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 127 / 8e-31 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10022988 pacid=23146135 polypeptide=Lus10022988 locus=Lus10022988.g ID=Lus10022988.BGIv1.0 annot-version=v1.0 ATGAACGGGGCAGTGTTTGTGGCGATTGCTGCAGCTGTTGGCAACTTGCTGCAAGGATGGGATAATGCAACCATCGCTGGATCTGTTCTTTACATAAAGA AGGAGTTCAATTTGGAAAGTAACCCGACCATAGAAGGCTTGATCGTAGCCATGTCCTTGATAGGAGCCACAGTGATCACTACGTGTTCTGGTCCCATATC AGACGCTCTAGGGCGCCGTCCTCTCCTCATAGTCTCATCTGTATTCTATTTTATCAGTGGTTTAGTAATGCTATGGTCTCCCAATGTGTATGTTTTGCTG TTGGCAAGACTTTTGGATGGTTTTGGAATCGGTTTGGCAGTCACCTTGGTCCCCGTTTATATATCCGAGACAGCACCTCCTGAGATTAGGGGACTTTTGA ATACTCTACCACAGTTCACTGGATCGGGTGGAATGTTCCTTTCGTATTGTATGGTTTTTGGTATGTCCTTGATGGAGACACCTAGTTGGAGATTAATGCT TGGTGTGCTCTCAATCCCTTCCCTCCTCTACTTTGCACTGACTATATTCTTCTTGCCTGAATCACCGAGATGGCTGGTTAGTAAAGGAAGGATGCTTGAG GCCAAGCAGGTTTTGCAGAGGCTCCGCGGAAGGGAAGACGTCTCTGGTGAGATGGCTTTGCTGGTGGAGGGACTTGGCGTTGGGGGTGAAACATCAATTG AAGAGTACATAATTGGCCCTGACAACGAAGTAATGGACGACCAAGACATATCTGGTGACAAGGATCATATTAAGTTATATGGGCCAGAAGCAGGTCTAAG TTGGGTTGCTAGACCTGTCACTGGACAAAGCAATCTTGGCATTGCATCTCGTCGAGGAAGCATGGCTGGTCAGACGGTGCCTCTCGTTGATCCTCTTGTG ACCCTCTTTGGTAGTGTTCATGAGAAGCTTCCTGATAATGGAAGCATGAGGAGCATGCTTTTCCCTCACTTTGGTAGCATGTTCAGTGTGGGAGGAAATC AGGCCAGACCCGAAGATGACTGGGATGAGGAGAGCCAAGTTCGAGACGGAGAAGATTATCAATCTGATGCTGCCGGTGGTGGTGATTCTGATGATAATTT GCATAGTCCATTAATGTCACGTCAGACAACAAGTATGGACAACAAGGACATGGTTCAACCTGCTCATGGAAGCATGTCAAGCATGAGACACGGCAGTCTG TTCCAAGGCAATGTTGGAGAGCAGGGTGGAAGTACCGGGATCGGTGGTGGCTGGCAGTTGGCATGGCAATGGACTGAAAGAGAGGGTAAAGATGGAGAGA AGGAAGGAGGTTTTAAAAGAATTTATTTGCATCAAGAAGGTGTTGGTGTCCAAGCATCTCGCCGGGGATCTTTGGTTTCTCTTCCAGGTGGAGATACTGC TGTTGAAAGTGAATTTGTGCAGGCTGCTGCTCTGGTTAGTCAACCTGCATTGTACTCCAAAGATTTAGTCAATCAGCATCCAGTTGGACCTGCCATGGTT CATCCATCTGAAGCTGCATCTAAAGGTCCAAGCTGGAGAGATCTGTTTGAACCTGGTGTTAAGCGAGCCCTCGTTGTTGGAGTAGGGCTACAAATCCTTC AGCAGTTCTCTGGTATCAATGGTGTTCTCTATTACACTCCTCAAATTCTTGACAAAGCTGGTGTTGGAGTTCTACTATCAAACTTGGGCATTAGTTCAGA TTCTGCATCTCTGCTTATTAGTGGCGTCACGACATTGCTGATGCTTCCCTCTATAGCTGTTGCAATGAGACTCATGGATATTGCAGGAAGAAGGAGTTTG CTACTGACCACAATCCCTGCGTTGATACTATCCCTCCTGGTGCTTGTTATTGGAAGCACAGTGAACTTTGGCAGCGTTGTGAATGCAGCAATCTCAACAG TAAGCGTGATAGTGTACTTCTGTTGCTTTGTGATGGGATTCGGTCCAGTTCCCAACATCTTATGTGCCGAAATATTCCCAACGCGTGTTCGTGGATTGTG CATCGCAATATGTGCACTCACATTTTGGATAGGAGATATCATCGTTACGTATTCGCTCCCAGTGATGCTGAACTCAATCGGGCTAGCTGGTGTATTCGGG ATGTACGCTGTCGTGTGTGTCATAGCTCTAGTGTTTGTGTACTTGAAAGTTCCAGAGACCAAAGGAATGCCCCTTGAAGTCATCACTGAGTTCTTCTCCG TTGGTGCTAAGCAAGCAGAAGAAGAGAAGCAGCAGTGA
AA sequence Show only first row Show all	>Lus10022988 pacid=23146135 polypeptide=Lus10022988 locus=Lus10022988.g ID=Lus10022988.BGIv1.0 annot-version=v1.0 MNGAVFVAIAAAVGNLLQGWDNATIAGSVLYIKKEFNLESNPTIEGLIVAMSLIGATVITTCSGPISDALGRRPLLIVSSVFYFISGLVMLWSPNVYVLL LARLLDGFGIGLAVTLVPVYISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMETPSWRLMLGVLSIPSLLYFALTIFFLPESPRWLVSKGRMLE AKQVLQRLRGREDVSGEMALLVEGLGVGGETSIEEYIIGPDNEVMDDQDISGDKDHIKLYGPEAGLSWVARPVTGQSNLGIASRRGSMAGQTVPLVDPLV TLFGSVHEKLPDNGSMRSMLFPHFGSMFSVGGNQARPEDDWDEESQVRDGEDYQSDAAGGGDSDDNLHSPLMSRQTTSMDNKDMVQPAHGSMSSMRHGSL FQGNVGEQGGSTGIGGGWQLAWQWTEREGKDGEKEGGFKRIYLHQEGVGVQASRRGSLVSLPGGDTAVESEFVQAAALVSQPALYSKDLVNQHPVGPAMV HPSEAASKGPSWRDLFEPGVKRALVVGVGLQILQQFSGINGVLYYTPQILDKAGVGVLLSNLGISSDSASLLISGVTTLLMLPSIAVAMRLMDIAGRRSL LLTTIPALILSLLVLVIGSTVNFGSVVNAAISTVSVIVYFCCFVMGFGPVPNILCAEIFPTRVRGLCIAICALTFWIGDIIVTYSLPVMLNSIGLAGVFG MYAVVCVIALVFVYLKVPETKGMPLEVITEFFSVGAKQAEEEKQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022988 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	1.0	0.8976
AT1G51980			Insulinase (Peptidase family M...		Lus10035000 [exp]	3.2	0.7739
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	4.0	0.8846
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	4.9	0.8802
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	12.6	0.8103
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	15.7	0.8116
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	19.3	0.7474
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	20.7	0.7917
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	24.3	0.7500
AT1G64650			Major facilitator superfamily ...		Lus10033228 [exp]	24.7	0.7985

Compare expression of checked genes

Lus10022988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.