Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35300 836 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT3G51490 696 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT1G20840 658 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT2G35740 131 / 5e-32 ATINT3 nositol transporter 3 (.1) AT1G30220 128 / 8e-31 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 122 / 8e-29 ATINT4 inositol transporter 4 (.1) AT3G18830 108 / 1e-24 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT5G16150 107 / 2e-24 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT2G43330 106 / 4e-24 ATINT1 inositol transporter 1 (.1) AT4G36670 104 / 2e-23 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022988 [exp] 1123 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 1102 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 1082 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10030726 [exp] 758 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 735 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10012709 [exp] 591 / 0 AT3G51490 818 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10010886 [exp] 575 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10017561 [exp] 132 / 5e-32 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10028118 [exp] 128 / 6e-31 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168500 [exp] 909 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 885 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G255400 [exp] 820 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.002G006200 [exp] 808 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G098900 [exp] 702 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.006G015300 [exp] 124 / 1e-29 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 117 / 2e-27 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 114 / 4e-26 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G027900 [exp] 112 / 8e-26 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 109 / 9e-25 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10022989 pacid=23146185 polypeptide=Lus10022989 locus=Lus10022989.g ID=Lus10022989.BGIv1.0 annot-version=v1.0 ATGAACGGAGCAGTGTTTGTGGCGATTGCTGCAGCTATTGGCAACTTGCTGCAAGGATGGGATAATGCAACCATCGCTGGATCTGTTCTTTACATAAAGA AGGAGTTCAATTTGGAAAGTAACCCGACCATAGAAGGCTTGATCGTAGCCATGTCCTTGATAGGAGCCACAGTGATCACTACGTGTTCTGGTCCCATATC AGACGCTCTAGGGCGCCGCCCTCTCCTCATAGTCTCATCTGTATTCTATTTTATCAGTGGTTTAGTAATGCTATGGTCTCCCAATGTGTATGTTTTGCTA TTGGCAAGCAATGTGTATGTTTTGCTGTTGGCAAGACTTTTGGATGGTTTTGGAATCGGTTTGGCAGTCACCTTGGTCCCCGTTTATATATCCGAGACAG CACCTCCTGAGATTAGGGGACTTTTGAATACTCTACCACAGTTCACTGGATCGGGTGGAATGTTCCTTTCGTATTGTATGGTTTTTGGTATGTCCTTGAT GGAGACACCTAGTTGGAGATTAATGCTTGGTGTGCTCTCAATCCCTTCCCTCCTCTACTTTGCACTGACTATATTCTTCTTGCCTGAATCCCCGAGATGG CTGGTTAGTAAAGGAAGGATGCTTGAGGCCAAGCAGGTTTTGCAGAGGCTCCGTGGAAGGGAAGACGTCTCTGGTGAGATGGCTTTGCTGGTGGAGGGAC TTGGCGTTGGGGGTGAAACATCAATTGAAGAGTACATAATTGGCCCTGACAACGAAGTAATGGATGACCCGAAACCTGTCACCGGACAAAGCAATCTTGG CATTGCATCTCGACGAGGAAGCATGGCTGGTCAGACAGTGCCTCTCGTTGATCCTTTGGTGACCCTCTTTGGTAGTGTTCATGAGAAGCTTCCTGATAAT GGAAGCATGAGGAGCATGCTTTTCCCTCACTTTGGTAGCATGTTCAGTGTGGGAGGAAATCAGGCCAGACCCGAAGATGACTGGGATGAGGAGAGCCAAG TTCGAGACGGAGAAGATTATCAATCTGATGCTGCCGGTGGTGGTGATTCTGATGATAATTTGCAGAGTCCATTAATGTCACGTCAGACAACAAGTATGGA CAACAAGGACATGGTTCAACCTGCTCATGGAAGCATGTCAAGCATGAGACACGGCAGTCTGCTCCAAGGCAATGTCGGAGAGCAAGGTGGAAGTACTGGG ATCGGTGGTGGCTGGCAGTTGGCATGGCAATGGACTGAAAGAGAGGGTAAAGATGGAGAGAAGGAAGGAGGTTTTAAAAGAATTTATTTGCATCAAGAAG GTGTTGGTGTCCAAGCATCTCGCCGGGGATCTTTGGTTTCTCTTCCAGGTGGAGATACTGCTGTTGAAAGTGAATTTGTGCAGGCTGCTGCTCTGGTTAG TCAACCTGCATTGTACTCCAAAGATTTAGTCAATCAGCATCCAGTTGGACCTGCCATGGTTCATCCATCTGAAGCTGCATCTAAAGGTCCAAGTTGGAGA GATCTCTTTGAACCAGGTGTAAAACGAGCCCTCGTTGTTGGGGTAGGGCTACAAATCCTTCAGCAGCTGGTGTTGGAGTGCTACTACCAAACTTGGGCAT TAGTTAAAAGTGGCGTCACGACAAAGCTGATGCTTCCCTCTATAGCTGTTGCAATGAGACTAATGGATATTGCAGGAAGAAGGAGTTTGCTACTGACCAC AATTCCTGCGTTGATACTATCCCTGCTGGTGCTTGTGATTGGAAGCACAGTGAACTTTGGCAGCGTTGTGAATGCAGCAATCTCAACAGTAAGCGTGATA GTGTACTTCTGTTGCTTTGTGATGGGATTCGGTCCAGTTCCCAACATCTTATGTGCCGAAATATTCCCAACGCGTGTTCGTGGACTGTGCATCGCAATAT GTGCACTCACATTTTGGATAGGAGATATCATCGTTACGTATTCGCTCCCAGTGATGCTGAACTCAATCGGGCTTGCTGGCGTATTCGGGATGTACGCGGT CGTGTGTGTCATAGCTCTAGTGTTTGTGTACTTGAAAGTTCCAGAGACCAAAGGAATGCCCCTTGAAGTCATCACTGAGTTCTTCTCTGTTGGTGCTAAG CAAGCAGAAGAAGAGAAGCTGCAGTGA
AA sequence Show only first row Show all	>Lus10022989 pacid=23146185 polypeptide=Lus10022989 locus=Lus10022989.g ID=Lus10022989.BGIv1.0 annot-version=v1.0 MNGAVFVAIAAAIGNLLQGWDNATIAGSVLYIKKEFNLESNPTIEGLIVAMSLIGATVITTCSGPISDALGRRPLLIVSSVFYFISGLVMLWSPNVYVLL LASNVYVLLLARLLDGFGIGLAVTLVPVYISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMETPSWRLMLGVLSIPSLLYFALTIFFLPESPRW LVSKGRMLEAKQVLQRLRGREDVSGEMALLVEGLGVGGETSIEEYIIGPDNEVMDDPKPVTGQSNLGIASRRGSMAGQTVPLVDPLVTLFGSVHEKLPDN GSMRSMLFPHFGSMFSVGGNQARPEDDWDEESQVRDGEDYQSDAAGGGDSDDNLQSPLMSRQTTSMDNKDMVQPAHGSMSSMRHGSLLQGNVGEQGGSTG IGGGWQLAWQWTEREGKDGEKEGGFKRIYLHQEGVGVQASRRGSLVSLPGGDTAVESEFVQAAALVSQPALYSKDLVNQHPVGPAMVHPSEAASKGPSWR DLFEPGVKRALVVGVGLQILQQLVLECYYQTWALVKSGVTTKLMLPSIAVAMRLMDIAGRRSLLLTTIPALILSLLVLVIGSTVNFGSVVNAAISTVSVI VYFCCFVMGFGPVPNILCAEIFPTRVRGLCIAICALTFWIGDIIVTYSLPVMLNSIGLAGVFGMYAVVCVIALVFVYLKVPETKGMPLEVITEFFSVGAK QAEEEKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	0	1
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	3.2	0.9112
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	4.2	0.8944
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	5.1	0.9097
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10026370 [exp]	6.8	0.8528
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	7.7	0.8994
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	8.1	0.9039
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	9.8	0.8924
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	10.2	0.8699
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	10.8	0.9026
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	12.7	0.8925

Compare expression of checked genes

Lus10022989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.