Plant FIBer expression Database

Lus10022991 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17250 615 / 0 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001388
[exp]
1040 / 0 AT2G17250 630 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10022992
[exp]
204 / 2e-62 AT2G17250 164 / 4e-48 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G168100
[exp]
727 / 0 AT2G17250 650 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03914 CBF CBF/Mak21 family
Representative CDS sequence
>Lus10022991 pacid=23146163 polypeptide=Lus10022991 locus=Lus10022991.g ID=Lus10022991.BGIv1.0 annot-version=v1.0
ATGACTAGTCCGGCGAACAAGAAGCAGAAGTCCAAGAATAAATCGAAGTCCAAGCACTCACTTAAGGAACTCAAAGCTCTCGGCCAGCAGCTGCTCTCTT
CCAGAAGTCACGTCAACAACCTCCCTCTCCTCCTCGAGTTCATCTTCCCTGAATCACCTCCTCAGTTCGTTCTTGAATCCCTTCTCTCTCTCCAGTCGTT
CTTCACTCCTCTCCTCCCTCAACTCCCTTCTTCCTCCACCTCCTCCAAGACTCCTCATTCCAACGACGATGCTGAAATCATCTACAAGACCTGGCTCCGC
TCCAAGTTTGACACCCTTGTTAGCTCCCTCGTTGACATCCTCATCTCTCCCGATCCTGACCCCACTTTGAAAGAAGTTGTTTTGGATTCGATCATGGAGT
TTGTTAAGGTTGGGAATAGAGGGACGTTTCATTCTGCCATATATCACAGGTTAATCCACAACATTGTCTACTCAACTACACCTGTTGATTTTATTGTGGA
TTTCCTGGTGTCCAAGTTCTTCAAGTATTCTGACGTTCGTTACTTTACGTATATCAGCCTTGACAAACTTGCTAGAACATTGGAAACAAAAGGAACCAGA
GACAGCAAAACTGAAAGTTCTGGTGGTGACGTTGAGAATCAGAGCAACTTAATCGAGAGTGCTGAGCTTCCAATCTACAAAATGCACTATATTTTGTCAC
ACATGCCCTCCATTAATGACGAGAAAGAGAACTCCAATCTGGAGTCGTGGAGTAATTCAGGAATCCCCTTGAAAGGTGAAACTGAAATACCTAAATCCTT
GAAACTTAAAGATAAACAGCTCAATTCAAGCAAACAAACTAATGATACCTCAACTGCTAGTGTTGTCAAAAAGATGAAACTTAAATTTACAAAGGCATGG
ATTTCATTTCTTAAGTTGCCACTTCCACTTGACGTATACAAGGAGGTTCTCGCTACTATGCATCAAGCTGTCATGCCAAACATGACCAATTGCCTGATGT
TATGTGACTTCTTAACAAGATCATATGATATTGGTGGAGTTGTCAGCGTCATGGCTCTTAGTAGTCTCTTCATCCTCATGACAAAGCATGGGTTGGAATA
CCCTGACTTTTATGAGAAACTATATGCATTGCTGGTACCTTCTATCTTCATGGCGAAACATAGAGCAAAATTTTTTGAGCTTCTTGATTCTTGTCTGAGG
TCTCCTCTTCTTCCAGCATACCTAGCTGCTGCTTTTACCAAGCGCTTGAGTAGACTCTCGATTGTAGTCCCTCCATCCGGAGGGTTGGTTATTATTGCAT
TGATTCACAACCTCTTGCGTAGACATCCATCAATCAGCTCCTTGGTCCACCGGGAAGAAGCAATTGCGTCAGAAGCAGAAAGAGGCAATGTTGACGATGA
TGGTGGGAGTGGAACTACAAAAAGAGTTGGAATTGACCTGTTTGACAACGAGGAAAGTAATCCAATGAAGTCTAATGCATTGAGAAGTTCCTTGTGGGAA
GTTGAGAACCTACGTCACCATTACTGTCCTCCTGTTTCAAGGTTTGTGGAATCGTTGGAGAGAGACTTAACGGTGGCATCGAAAACCATAGAATTGAACA
TAAAAGATTTCAGTTCAGGATCGTACGCTACGATATTTGGGGCAGAGATTAGGAGAAGAGTGAAACAGGTGCCGCTGGCATTTTACAAAGTGACGCCAAC
TACGTTGTTCTCGGAGTCCGATTTTTGTGGCTGGGCGTTCAAATGCGAAGAAGGAAGCAAGGAAGGAGGTGAGAGCAATGGCGTCTTGGACACCCATGCA
GCCAGCAGCCCTGCGAAGCGACAGCGGAGAGATTAG
AA sequence
>Lus10022991 pacid=23146163 polypeptide=Lus10022991 locus=Lus10022991.g ID=Lus10022991.BGIv1.0 annot-version=v1.0
MTSPANKKQKSKNKSKSKHSLKELKALGQQLLSSRSHVNNLPLLLEFIFPESPPQFVLESLLSLQSFFTPLLPQLPSSSTSSKTPHSNDDAEIIYKTWLR
SKFDTLVSSLVDILISPDPDPTLKEVVLDSIMEFVKVGNRGTFHSAIYHRLIHNIVYSTTPVDFIVDFLVSKFFKYSDVRYFTYISLDKLARTLETKGTR
DSKTESSGGDVENQSNLIESAELPIYKMHYILSHMPSINDEKENSNLESWSNSGIPLKGETEIPKSLKLKDKQLNSSKQTNDTSTASVVKKMKLKFTKAW
ISFLKLPLPLDVYKEVLATMHQAVMPNMTNCLMLCDFLTRSYDIGGVVSVMALSSLFILMTKHGLEYPDFYEKLYALLVPSIFMAKHRAKFFELLDSCLR
SPLLPAYLAAAFTKRLSRLSIVVPPSGGLVIIALIHNLLRRHPSISSLVHREEAIASEAERGNVDDDGGSGTTKRVGIDLFDNEESNPMKSNALRSSLWE
VENLRHHYCPPVSRFVESLERDLTVASKTIELNIKDFSSGSYATIFGAEIRRRVKQVPLAFYKVTPTTLFSESDFCGWAFKCEEGSKEGGESNGVLDTHA
ASSPAKRQRRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Lus10022991
[exp]
0 1
AT5G08610 PDE340 PIGMENT DEFECTIVE 340, P-loop ... Lus10010127
[exp]
1.7 0.8861
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Lus10020542
[exp]
7.7 0.8669
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Lus10009390
[exp]
8.4 0.8690
AT3G18600 P-loop containing nucleoside t... Lus10027240
[exp]
15.2 0.8461
AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 ... Lus10027475
[exp]
18.2 0.8043
AT3G15460 Ribosomal RNA processing Brix ... Lus10019857
[exp]
19.4 0.7822
AT3G20780 RHL3, HYP6, BIN... ROOT HAIRLESS 3, ELONGATED HYP... Lus10031241
[exp]
19.6 0.8581
AT1G15870 Mitochondrial glycoprotein fam... Lus10026060
[exp]
21.2 0.8103
AT2G18330 AAA-type ATPase family protein... Lus10028305
[exp]
22.3 0.8390
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Lus10008853
[exp]
23.0 0.8330

Lus10022991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.