Plant FIBer expression Database

Lus10022992 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17250 70 / 2e-14 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022991
[exp]
144 / 1e-40 AT2G17250 660 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Lus10001388
[exp]
137 / 7e-38 AT2G17250 630 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G168100
[exp]
89 / 6e-21 AT2G17250 650 / 0.0 EMBRYO DEFECTIVE 2762, CCAAT-binding factor (.1)
PFAM info
Representative CDS sequence
>Lus10022992 pacid=23146154 polypeptide=Lus10022992 locus=Lus10022992.g ID=Lus10022992.BGIv1.0 annot-version=v1.0
ATGACTAGTCCGGCGAACAAGAAGCAGAAGTCCAAGAATAAATCGAAGTCCAAGCACTCACTTAAGGAACTCAAAGCTCTCGGCCAGCAGCTGCTCTCTT
CCAGAAGTCACGTCAACAACCTCCCTCTCCTCCTCGAGTTCATCTTCCCTGAATCACCTCCTCAGCTCGTTCTTGAATCCCTTCTCTCTCTCCAGTCGTT
CTTCACTCCTCTCCTCCCTCAACTCCCTTCTTCCTCCACCTCCTCCAAGACTCCTCATTCCAACGACGATGCTGAAATCATCTACAAGACCTGGCTCCGC
TCCAAGTGTGACTCCCTTGTTAGCTCCCTCGTTGACATCCTCATCTCTCCCGATCCTGACCCCACTTTGAAAGAAGTTGTTTTGGATTCGATCATGGAGT
TTGTTAAGGTTGGGAATAGAGGGACGTTTCATTCTGCCATATATCACAGGTTAATCCACAACATTGTAAGTAGCTCTAGTTTCCTACCTGTTGGCGTATC
TTCCAGACTTGGTTAA
AA sequence
>Lus10022992 pacid=23146154 polypeptide=Lus10022992 locus=Lus10022992.g ID=Lus10022992.BGIv1.0 annot-version=v1.0
MTSPANKKQKSKNKSKSKHSLKELKALGQQLLSSRSHVNNLPLLLEFIFPESPPQLVLESLLSLQSFFTPLLPQLPSSSTSSKTPHSNDDAEIIYKTWLR
SKCDSLVSSLVDILISPDPDPTLKEVVLDSIMEFVKVGNRGTFHSAIYHRLIHNIVSSSSFLPVGVSSRLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17250 EMB2762 EMBRYO DEFECTIVE 2762, CCAAT-b... Lus10022992
[exp]
0 1
AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 ... Lus10039230
[exp]
10.4 0.7758
AT4G05020 NDB2 NAD(P)H dehydrogenase B2 (.1),... Lus10002599
[exp]
12.5 0.8120
AT3G12340 FKBP-like peptidyl-prolyl cis-... Lus10011649
[exp]
17.4 0.6805
AT5G22100 RNA cyclase family protein (.1... Lus10004092
[exp]
19.0 0.7805
AT3G20050 ATTCP-1 T-complex protein 1 alpha subu... Lus10036713
[exp]
24.7 0.7174
AT4G14170 Pentatricopeptide repeat (PPR)... Lus10026778
[exp]
27.5 0.7302
AT2G42710 Ribosomal protein L1p/L10e fam... Lus10036988
[exp]
32.8 0.7355
AT4G10620 P-loop containing nucleoside t... Lus10035986
[exp]
33.3 0.7279
AT5G22100 RNA cyclase family protein (.1... Lus10013351
[exp]
33.7 0.7618
AT5G14520 pescadillo-related (.1) Lus10002201
[exp]
34.4 0.7592

Lus10022992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.