Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004397 [exp] 350 / 3e-122 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 342 / 6e-119 AT5G27260 74 / 1e-14 unknown protein Lus10028091 [exp] 202 / 3e-64 ND / Lus10010798 [exp] 206 / 1e-63 AT5G27260 61 / 5e-10 unknown protein Lus10006034 [exp] 187 / 9e-59 AT5G27260 42 / 2e-04 unknown protein Lus10024284 [exp] 133 / 5e-39 AT5G27260 50 / 2e-07 unknown protein Lus10033100 [exp] 107 / 3e-28 ND / Lus10024762 [exp] 90 / 1e-22 ND / Lus10032816 [exp] 91 / 2e-22 AT2G24960 57 / 1e-09 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022993 pacid=23146119 polypeptide=Lus10022993 locus=Lus10022993.g ID=Lus10022993.BGIv1.0 annot-version=v1.0 ATGCAGAATGGAGGGGCAGATGTATTCACCATGGCATATACACCTACAGAAAGTGAAGAACCAGCCGTGGAGGCAAACAATGACATCCCTGGGGGTGTGC AAACCACTCATGAGTGGACTCAGTTCGGACAAGACCTTGTCAACATATGTGGGCTAATAGGGGGCGCTTTTGAAAAGGTTGGGATTGTATTCTCAATTCC CCAAAATATCAAGTTGGATTCACATGCAGGCCCTGGTGACTTGATGGGAGAACAAAATGACACTTTCGATTCATATACTATTCCTGAGAACATGGAGCAT ACTGCAGTTATGGAAGAGATTATCAATCAAGGGATAGACGTGCATGCGACCAGTCTGAAAGCGGTAGAGGGTGAAATCACCTCCAAACGTGTGCAGATAA ACGGTAAGGAAAAAGCCTCATCTTCGGGAACAAAGAGATCCAGGCAGCAATTTTCTGAGGAGGACAAAGCTCAACTTGCTACCAATCTTGCAATGACATC GGAGCACATAGCAAAGATTGCAACTAACTATTGCATTGAAGGTGAGTTAGCTGTCAAGAGGCAGTTCCTGTATCAAGAGCTGGTTAAGTTCTCTGAACTT TCTGTCTGTGATCGAACCAGAGCTTTGAGACACTTGCACCGAGACGATGGTGATGCTAGCAGCTTCTTTCAGTTGCCAACCGATGAGGAGAAATTAGCCT TCCTGTATGCTATTTTGGAGTAG
AA sequence Show only first row Show all	>Lus10022993 pacid=23146119 polypeptide=Lus10022993 locus=Lus10022993.g ID=Lus10022993.BGIv1.0 annot-version=v1.0 MQNGGADVFTMAYTPTESEEPAVEANNDIPGGVQTTHEWTQFGQDLVNICGLIGGAFEKVGIVFSIPQNIKLDSHAGPGDLMGEQNDTFDSYTIPENMEH TAVMEEIINQGIDVHATSLKAVEGEITSKRVQINGKEKASSSGTKRSRQQFSEEDKAQLATNLAMTSEHIAKIATNYCIEGELAVKRQFLYQELVKFSEL SVCDRTRALRHLHRDDGDASSFFQLPTDEEKLAFLYAILE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022993 [exp]	0	1
					Lus10002291 [exp]	1.0	0.9936
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	1.4	0.9892
					Lus10032696 [exp]	3.0	0.9851
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	3.5	0.9777
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	3.5	0.9611
					Lus10043100 [exp]	5.0	0.9629
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038325 [exp]	5.2	0.9344
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	5.7	0.9515
					Lus10025483 [exp]	6.2	0.8937
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Lus10022251 [exp]	8.4	0.9337

Compare expression of checked genes

Lus10022993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.