Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38240 682 / 0 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001389 [exp] 918 / 0 AT4G38240 684 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168000 [exp] 728 / 0 AT4G38240 692 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3) Potri.004G206900 [exp] 721 / 0 AT4G38240 710 / 0.0 N-ACETYLGLUCOSAMINYLTRANSFERASE I, COMPLEX GLYCAN LESS 1, COMPLEX GLYCAN LESS, alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03071 [flax] [poplar] GNT-I GNT-I family
Representative CDS sequence Show only first row Show all	>Lus10022994 pacid=23146116 polypeptide=Lus10022994 locus=Lus10022994.g ID=Lus10022994.BGIv1.0 annot-version=v1.0 ATGGCAAAAATGGCTTGCGATTTCCGATACCTTCTGCTACCTGCTGCTGTCCTATTCATCTATGTTCAGATGCGGCTTTTTACTACCCAGTCCGAATATG CCGATCGCCTTGCTACTGCTGTTGAATCAGAAAGTCACTGCACAAGTCAAATGAGATTACTGATTGATCAGATCAGCTCGCAACAGGGCAGAATTGTGGC ACTTGAAGAGGAAAAGAAACGTGGACAAGTTGAATGGAAACAACTGAAGTCCCTTGTTGAAGACTTCCAAAAGCAAGGCCTGCAAAAAGTGATTACCGAC GTACAGGCACCGGTAGCAGCAGTTGTCATTATGGCTTGCAACCGCGCTGATTACTTGGAAAGGACAGTTGAGTCTGTCACAAAGTATCAGAGCGGTGTTG CTTCAAAGTTTCCACTTTTCGTATCACAGGATGGACCACATCCAGACGTTAAAAGTAAGGCTTTGAGTTATAGTCAGCTGGTCTATATGCAGCACTTGGA CACTGAACCGGTGCACATGGATAATCCTGGCGAAATAATAGCATACTATAAAATTGCACGGCATTATAAATGGGCATTGGATCAGTTGTTCTTCAAGCAT AACTTCAACCGAGTAATCATTCTTGAAGATGACATGGAAATCGCACCTGATTTCTTTCAGTATTTTGAGGCTGCTGCAGCTCTGTTGGAAAAGGACAAAT CTATCATGGCTGTTTCCTCCTGGAATGATAATGGCCAGAAGCAGTTTGTGCATGATCCATATGCCCTATACCGTTCAGATTTCTTTCCTGGACTTGGTTG GATGTTGTCTAAGGGGACTTGGGATGAACTCTCCCCTAAATGGCCAAAAGCATATCCTTTATTCACTTACTGGGATGACTGGTTGAGATTAGAAGAGAAT CACAAGGGTCGGCAATTTCTTCGTCCAGAAGTCTGCAGGACGTATAATTTTGGTGAAGTCGGTTCTAGTTTGGGACAGTTCTTCAAGCAATATCTTGAGC CTATTAAGCTAAATGATGTCAAGGTCAACTGGATGTCAATGGATCTGAGCTACTTAATGAAGAACAAATATCCAAAACATTTTGGTGAAATGGTAAGAAA TGCCAAGCCAGTCCATGGGAAGGATGCTGTTCTCAAGGCATTTAACATAGTGGGCGACGTACGCATCCAGTACAATGACGAAGCTGACTTTGCAAGCATA GCACGCCAATTCGGCATTTTCGAGGAGTGGAAGGATGGAGTACCAAGGACAGCATACAAGGGAGTAGTGGTTTTCCGGCATCAAACGTCGAGGAGAATAT TTCTCGTTGGTTCGGATTCCTTGAGGCAGCTTGAGATTCAAGATGCTTGA
AA sequence Show only first row Show all	>Lus10022994 pacid=23146116 polypeptide=Lus10022994 locus=Lus10022994.g ID=Lus10022994.BGIv1.0 annot-version=v1.0 MAKMACDFRYLLLPAAVLFIYVQMRLFTTQSEYADRLATAVESESHCTSQMRLLIDQISSQQGRIVALEEEKKRGQVEWKQLKSLVEDFQKQGLQKVITD VQAPVAAVVIMACNRADYLERTVESVTKYQSGVASKFPLFVSQDGPHPDVKSKALSYSQLVYMQHLDTEPVHMDNPGEIIAYYKIARHYKWALDQLFFKH NFNRVIILEDDMEIAPDFFQYFEAAAALLEKDKSIMAVSSWNDNGQKQFVHDPYALYRSDFFPGLGWMLSKGTWDELSPKWPKAYPLFTYWDDWLRLEEN HKGRQFLRPEVCRTYNFGEVGSSLGQFFKQYLEPIKLNDVKVNWMSMDLSYLMKNKYPKHFGEMVRNAKPVHGKDAVLKAFNIVGDVRIQYNDEADFASI ARQFGIFEEWKDGVPRTAYKGVVVFRHQTSRRIFLVGSDSLRQLEIQDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10022994 [exp]	0	1
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	1.0	0.9458
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	3.5	0.9160
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	6.0	0.9372
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	8.9	0.8963
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	10.7	0.9064
					Lus10034398 [exp]	11.7	0.9214
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Lus10020067 [exp]	11.7	0.8745
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10014117 [exp]	12.0	0.9113
AT3G14910			unknown protein		Lus10011169 [exp]	13.1	0.8697
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	14.3	0.9022

Compare expression of checked genes

Lus10022994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.