Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005172 [exp] 113 / 1e-31 ND / Lus10038131 [exp] 113 / 2e-31 ND / Lus10031949 [exp] 48 / 5e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059400 [exp] 66 / 2e-13 ND / Potri.012G102400 [exp] 50 / 5e-08 ND / Potri.015G100600 [exp] 49 / 1e-07 ND / Potri.015G100500 [exp] 47 / 5e-07 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022997 pacid=23146169 polypeptide=Lus10022997 locus=Lus10022997.g ID=Lus10022997.BGIv1.0 annot-version=v1.0 ATGGTCATCAACCGCTCAAATGCGGGTCATTTTTTGTCGGCAGCCGAGAGATGGGCGAATTCTGGTATTATTACGTGGACGGCGTTGAGGAACCACAATC CATCGACGGCTGGAGCGCCCCCCGGCGGCAAGGTCCTCTGCTGGATACCCCCAAGTCCCGCTCCCTCTAGATCTCCAACGCCATTTTCTGTCTATACTTC CCTCATCTCCACCTACGATGTCGACTATGAAACCTTCGGCCGCCGGAGCACCGACTTGGACAGCTTTGCCTTCTGCATCGAGGAGCTCATTTCCCAATTG AAGAAGGCCCAATTGATCTCCGTAGCCACCATCGCGGCTTTCCACTCCACGGTGGCTCATTACATGGCACTGTTTCGCAACTACGGGGTCAACTACTAG
AA sequence Show only first row Show all	>Lus10022997 pacid=23146169 polypeptide=Lus10022997 locus=Lus10022997.g ID=Lus10022997.BGIv1.0 annot-version=v1.0 MVINRSNAGHFLSAAERWANSGIITWTALRNHNPSTAGAPPGGKVLCWIPPSPAPSRSPTPFSVYTSLISTYDVDYETFGRRSTDLDSFAFCIEELISQL KKAQLISVATIAAFHSTVAHYMALFRNYGVNY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022997 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10005174 [exp]	1.0	0.8559
					Lus10041373 [exp]	3.5	0.8477
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10035637 [exp]	5.1	0.8489
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10034287 [exp]	6.3	0.7982
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10007592 [exp]	7.7	0.7859
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10036303 [exp]	8.4	0.7746
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	9.5	0.7659
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	12.2	0.8267
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	13.6	0.8115
					Lus10020451 [exp]	15.3	0.8107

Compare expression of checked genes

Lus10022997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.