Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 281 / 4e-87 DNA-binding bromodomain-containing protein (.1) AT1G76380 257 / 2e-78 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 214 / 1e-60 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 71 / 1e-12 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 70 / 2e-12 DNA-binding bromodomain-containing protein (.1) AT3G54610 64 / 9e-11 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT5G63320 63 / 3e-10 NPX1 nuclear protein X1 (.1.2.3) AT5G14270 62 / 9e-10 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G27260 59 / 5e-09 GTE8 global transcription factor group E8 (.1.2) AT1G32750 59 / 5e-09 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001391 [exp] 865 / 0 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 237 / 1e-68 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 226 / 9e-65 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10030739 [exp] 190 / 5e-53 AT1G20670 418 / 4e-138 DNA-binding bromodomain-containing protein (.1) Lus10013220 [exp] 187 / 5e-52 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10011989 [exp] 67 / 3e-11 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 64 / 2e-10 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 64 / 3e-10 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10002784 [exp] 63 / 4e-10 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206200 [exp] 341 / 1e-108 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 340 / 3e-108 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.002G009100 [exp] 276 / 9e-85 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 265 / 3e-80 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 145 / 7e-37 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 144 / 2e-36 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 123 / 9e-30 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 74 / 7e-14 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 73 / 2e-13 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 71 / 9e-13 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10022999 pacid=23146131 polypeptide=Lus10022999 locus=Lus10022999.g ID=Lus10022999.BGIv1.0 annot-version=v1.0 ATGGAAAGCAATACGGCGACGACGAAGAAGAAGAAGAGGAAGAAAGGGCGACCTTCCCTCTTAGATCTCCATAAACGCAACCTCAAACTCCAACAACACC ACCATCCCACTTTCCATGACTCTTCCCTCCGCCGATCAGCCCGCCACTCCGTTCCGCCAGCGAATGACGACGACGACGACCCCCAATCGGACGGCAATCA CAGACAGAAGAAGAAGCTCAAGCTCCTCAATTCCAATTCCGACGTCGAAGGAAATTCCTCTTCAACCGCCGCCGCCAATCCAAAGAAGATCAAGCTCACC GCCGGATCTGGAATCCATGGCTCCCAAAAGTCATACAAGTCTATATCTGAATCCAATCAAGTTGACAATGTTGGAGACTCCGGCGGCTCCTTCACGCCTT TACCTGACAAAAAGCTACTCCTCTTCATCCTGGAGAGGCTCCAGAGCAAGGATACATATGGTGCATTCTCGGAGCCTGTGGACCCAGAAGAGCTTCCTGA TTACTATGAAATAATTGACAATCCAATGGATTTTATGACTGTTGCGAAGAAGCTTACTGAGGGTGTTTATGGCAGCCTTGAACAGTTTGAGAACGATGTT TTCTTAATTTGTTCAAATGCAATGGAATACAACGCCTCAGATACGATATATCATCGACAGGCACGAGCAATAGAAGAGCTAGCCAAAAAGAATTTTGAGA ATCTAAGGCAGGATAGTGATGATAATGAACAAACTAACAAAGTAGTGAGGAGAGGTAGACCACCAAAAGTTAAGAAAAAGCCCAGCAGGCCTGCTCTTGG ACGAGGTGCTTCAGAACCTTCATCGGACATAACTCCTGCTAGCACCAAAGTGGGGGCAATTCAGTTGAACTCTGGCTTTCCAGAAAGATCCGGACAAGAT AACAGTGCTCATGATGAATCAGCTCAGAATAAGTTGGACAAGAATCGAGAGACCACAGGTTCTATTCTCAAAGGTAATTTTAACTCATTAAAGCATGTGA AGGGCGTGTTTTTATTCGATGAAGATAGGCGCAGTACATACATGCAATTCCTCGAGTCAGCTAATGAACGAGAGTCGCCCGTGTTGACTACTATTCATTC CCAGAGGAAGCAACTAATGGCAGTAGGACTGCTGACAGAGTACGGTTATCCAAGAAGCCTAGCAAGATTTGCTGCAAATGCTGGATCTATTGTATGGAGA GTGGCGTCAGCTAAGGTACAAAGGTCTTTGGCACCAGGAGTTAAGTTTGGTCCAGGATGGGTTGGAGAAAATGATATTCCCCAACAAAGTCCGTCGCCTT TTTCTTTGCCTTCTACAAAGCTTGAATCAGCACCACAACCTTCCTTGATTCATGTCAAATCATGTTCTGGAAATAACTTGCCATCAGAAAATCACAAAAG TCTTAGGAGTGAGACGGTAGAAGAATCTAACCTTCAGCGGCAGACACTTCATTCGTCGACTGCTGAGAAATCAGACATTGTTGAGCCTTGCATTAGTGTT GACTTACACAGGTCTCCACGGTCCCCAAGCTCAACCCAGACCGACTCTGCACAACAAGATTTGGCATTGTAG
AA sequence Show only first row Show all	>Lus10022999 pacid=23146131 polypeptide=Lus10022999 locus=Lus10022999.g ID=Lus10022999.BGIv1.0 annot-version=v1.0 MESNTATTKKKKRKKGRPSLLDLHKRNLKLQQHHHPTFHDSSLRRSARHSVPPANDDDDDPQSDGNHRQKKKLKLLNSNSDVEGNSSSTAAANPKKIKLT AGSGIHGSQKSYKSISESNQVDNVGDSGGSFTPLPDKKLLLFILERLQSKDTYGAFSEPVDPEELPDYYEIIDNPMDFMTVAKKLTEGVYGSLEQFENDV FLICSNAMEYNASDTIYHRQARAIEELAKKNFENLRQDSDDNEQTNKVVRRGRPPKVKKKPSRPALGRGASEPSSDITPASTKVGAIQLNSGFPERSGQD NSAHDESAQNKLDKNRETTGSILKGNFNSLKHVKGVFLFDEDRRSTYMQFLESANERESPVLTTIHSQRKQLMAVGLLTEYGYPRSLARFAANAGSIVWR VASAKVQRSLAPGVKFGPGWVGENDIPQQSPSPFSLPSTKLESAPQPSLIHVKSCSGNNLPSENHKSLRSETVEESNLQRQTLHSSTAEKSDIVEPCISV DLHRSPRSPSSTQTDSAQQDLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	0	1
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	2.8	0.9010
					Lus10026715 [exp]	6.2	0.9076
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	6.6	0.9100
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10033830 [exp]	6.6	0.8765
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	9.2	0.8886
AT5G18420			unknown protein		Lus10008554 [exp]	11.6	0.9023
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	13.0	0.8698
AT1G26640			Amino acid kinase family prote...		Lus10026636 [exp]	15.1	0.8645
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	17.0	0.8917
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	19.8	0.8881

Compare expression of checked genes

Lus10022999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.