Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17220 529 / 0 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT4G35600 432 / 5e-150 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT1G76360 416 / 7e-143 Protein kinase superfamily protein (.1) AT2G28930 408 / 1e-140 APK1B protein kinase 1B (.1.2.3) AT5G02290 404 / 3e-139 NAK Protein kinase superfamily protein (.1.2) AT1G07570 403 / 7e-139 APK1A Protein kinase superfamily protein (.1.2.3) AT2G39660 392 / 9e-135 BIK1 botrytis-induced kinase1 (.1) AT2G02800 389 / 3e-133 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 384 / 5e-131 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 380 / 7e-130 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001392 [exp] 756 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10026546 [exp] 644 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 639 / 0 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024512 [exp] 460 / 8e-161 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 454 / 2e-158 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10012256 [exp] 423 / 1e-146 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 423 / 1e-146 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10023794 [exp] 421 / 1e-146 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 414 / 4e-143 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G167400 [exp] 601 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 598 / 0 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.007G062700 [exp] 484 / 2e-170 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 479 / 2e-168 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G251900 [exp] 441 / 3e-153 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 423 / 7e-146 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 412 / 1e-142 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 411 / 5e-142 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 410 / 2e-141 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 408 / 7e-141 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023000 pacid=23146115 polypeptide=Lus10023000 locus=Lus10023000.g ID=Lus10023000.BGIv1.0 annot-version=v1.0 ATGGGGCTTTGCTGGTCCTCTTCACCCACCACTCCTACACCCTCCTCCACTGGTCGTTTTAGTTCAGGAGGGGTGTCTCATACTCCTAGCAATGGAACTT CATCAAGCAGCAACATAACTACTTCTAAGGGCAGCAACGTCTCTGGAAACAGCCATTTTTCTGCTGCCAGTGGAGATGCTTCCTTCCCCAATGGCCAAAT CTTGCCAACCCCTAACTTGAAGATCTTCTCTTTCGCGGAGCTTAAGCTTGCCACTAAGGGTTTCAGGCCTGAAACTGTGCTTGGAGAAGGTGGTTTTGGT AAAGTCTACAAAGGTTGGCTCGACGAGAAGAAGCCTGGGAAACATGGGAGTGGAACTGTTATTGCTGTCAAGAAATTGAACTCGGAGAGCTTGCAAGGAT TGGAAGAATGGCGGTCAGAAATTAATTTCTTGGGAACACTTTCTCACCCCAACCTTGTGAGGTTGTTGGGATTCTGCTTTGAGGACAATGAGCTTCTCCT CGTGTACGAGTTCATGCAGAAGGGAAGCTTGGAAAACCATCTATTTGGAAGAGGTGCAGCTGTTCAGCCACTTCCTTGGGAGATAAGGTTGAAGATTTCT ATAGGCGCAGGTCGTGGTCTTGCTTTCTTGCATACACCTGAAAAGAAAGTGATTTACAGAGATTTTAAAGCCTCCAACATATTGCTTGATGGGTCTTACA CGGCCAAGATATCAGATTTCGGGCTGGCAAAGTTCGGTCCTTCGGCTAGTCAGTCGCATGTGACAACACGTGTCATGGGGACGTACGGTTATGCTGCTCC CGAGTATGTCGCCACAGGTCATCTATATGTTAAAAGTGATGTGTATGGTTTTGGGGTCGTTCTAGTGGAGATCCTGACCGGGTTAAGGGCACTTGATTCA AAACGGCCAAGCGGGAAGCAAACTCTCACAGACTGGATCAAGCCGTATTTGAACGACAAGAGAAAGCTGAAAAGCATAATGGACTCAAATTTGGAAGGCA GGTATCCATCAAAAGCAGCATTCAGGATAGCACAACTAGCACTAACTTGTTTGGAAGCCGAACCAAAGAATCGACCCTCAATGAGCGAAGTTGTGGATAC ATTGGAGAGGATTGCATCACGCAGGGAGAGGACATTAGAGCCTCGAAACCGCTCCAACAACCATCGGCGCCCTGGCAGCAACCGGCAGCAATCTTTGCAA TACCGTTCCCCACTGCATCCACAGCCGCAGGATGCAGGTCAGGGTTATGGAAACTCGCCTAGGGTGAGATGA
AA sequence Show only first row Show all	>Lus10023000 pacid=23146115 polypeptide=Lus10023000 locus=Lus10023000.g ID=Lus10023000.BGIv1.0 annot-version=v1.0 MGLCWSSSPTTPTPSSTGRFSSGGVSHTPSNGTSSSSNITTSKGSNVSGNSHFSAASGDASFPNGQILPTPNLKIFSFAELKLATKGFRPETVLGEGGFG KVYKGWLDEKKPGKHGSGTVIAVKKLNSESLQGLEEWRSEINFLGTLSHPNLVRLLGFCFEDNELLLVYEFMQKGSLENHLFGRGAAVQPLPWEIRLKIS IGAGRGLAFLHTPEKKVIYRDFKASNILLDGSYTAKISDFGLAKFGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDS KRPSGKQTLTDWIKPYLNDKRKLKSIMDSNLEGRYPSKAAFRIAQLALTCLEAEPKNRPSMSEVVDTLERIASRRERTLEPRNRSNNHRRPGSNRQQSLQ YRSPLHPQPQDAGQGYGNSPRVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10023000 [exp]	0	1
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	18.7	0.7518
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Lus10038498 [exp]	32.0	0.6784
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	36.6	0.7397
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	45.0	0.6915
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10020773 [exp]	73.3	0.7132
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	106.2	0.6730
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	172.4	0.6785
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	245.1	0.6677

Compare expression of checked genes

Lus10023000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.