Plant FIBer expression Database

Lus10023001 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36895 300 / 6e-104 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001393
[exp]
443 / 2e-160 AT2G36895 303 / 3e-105 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G099300
[exp]
338 / 8e-119 AT2G36895 313 / 9e-109 unknown protein
PFAM info
Representative CDS sequence
>Lus10023001 pacid=23146111 polypeptide=Lus10023001 locus=Lus10023001.g ID=Lus10023001.BGIv1.0 annot-version=v1.0
ATGGCTGAAACCTCCGCTCTTTACTTCTCCGCCTTCACCTCCATTCCCCCCGTTTCTCGCTCCCGCGCTGCTTCCTCTTCTTTCCCTTCCCATACTTATT
CCCACCTTCGCTCTCACCGTCCTTACCTGCGCTTCACCTGCAAAGCTTCCGATCTCGGCGACGATTCACCATCTCTATTCCCTTGGTCCGACGGCGATAA
CGCCATAGAATGGGTTCAGGAGGAGAAGGTGACATTGTTCACTACCGATGGGCTCGTTCAGATTGGTGGCAACCTTGTTCCTCGACTTGTCAGATCCTCA
GATAAGAAGCAAAGCAAATCTAATAAGATTTCCAGGAGATTCCAGCGGTTCCAAGAGAGTGACTACATGGATCCGGATCAAAGCTTGTGTTTGGGTGCAT
TGTTTGACATTGCAGCAACCAATGGGCTTGATATGGGAAGAAGGCTGTGTATCCTTGGATTTTGCCGTTCTATTGAGATGCTGAGTGATGTTGTTGAAGA
TACTGTTCTGGAACATGGTGGGGAGGTGGTTGCAGCTGAGAAAGCAGTAAAAGGAGGGTTACATGAGAAGTTAAAGATGACAGTGGCGGTACCATATCTA
TGGGGTGTTCCGCCGGCTTCTGAGACGCTTCGCCTGGCTGTTAAGACTGGCGGGGGCATCGTGGATAAGGTTTATTGGCAGTGGGATTTTCTGTGA
AA sequence
>Lus10023001 pacid=23146111 polypeptide=Lus10023001 locus=Lus10023001.g ID=Lus10023001.BGIv1.0 annot-version=v1.0
MAETSALYFSAFTSIPPVSRSRAASSSFPSHTYSHLRSHRPYLRFTCKASDLGDDSPSLFPWSDGDNAIEWVQEEKVTLFTTDGLVQIGGNLVPRLVRSS
DKKQSKSNKISRRFQRFQESDYMDPDQSLCLGALFDIAATNGLDMGRRLCILGFCRSIEMLSDVVEDTVLEHGGEVVAAEKAVKGGLHEKLKMTVAVPYL
WGVPPASETLRLAVKTGGGIVDKVYWQWDFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36895 unknown protein Lus10023001
[exp]
0 1
AT4G35250 NAD(P)-binding Rossmann-fold s... Lus10003328
[exp]
2.8 0.9504
AT5G65840 Thioredoxin superfamily protei... Lus10011727
[exp]
4.5 0.9344
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Lus10035696
[exp]
5.0 0.9229
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Lus10008781
[exp]
5.2 0.9338
AT3G26070 Plastid-lipid associated prote... Lus10020982
[exp]
6.0 0.9218
AT4G14450 ATBET12 unknown protein Lus10021878
[exp]
6.0 0.9230
AT4G01060 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAP... Lus10005949
[exp]
9.8 0.9054
AT4G03410 Peroxisomal membrane 22 kDa (M... Lus10039800
[exp]
13.4 0.9045
AT1G74730 Protein of unknown function (D... Lus10042179
[exp]
16.0 0.9185
AT1G03130 PSAD-2 photosystem I subunit D-2 (.1) Lus10041209
[exp]
16.6 0.9106

Lus10023001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.