Plant FIBer expression Database

Lus10023003 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03420 108 / 5e-25 5'-AMP-activated protein kinase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G123300
[exp]
116 / 8e-28 AT5G03420 279 / 9e-86 5'-AMP-activated protein kinase-related (.1)
PFAM info
Representative CDS sequence
>Lus10023003 pacid=23146167 polypeptide=Lus10023003 locus=Lus10023003.g ID=Lus10023003.BGIv1.0 annot-version=v1.0
ATGGCGACTCTCTCTAAACTCCATTGTTTTCTTCCCTCCTTCCCTTCCCGCACTAAGCTCTTCTTCTCCAATCACCACCGCCGCCATTCTCCGCCGCAAG
ATGACGGACTCTTCTGGAATATCCACGACGACCACCACCATCCTTTCGGGGACCGTTCCTTGGTTTGCGCATGCTCTCTAAAGAGTCCCAGGGTGAAACG
GAAGGTTAAAAGCAATGAGGAGCTACGTGACGATATCAAGGAGTTCTTGTTGGATGTTGGGCTTCCAGAAGGCCACATTCCCTCCAGGAAGGAGCTTATT
GATTATGGGAGGATTGACCTTGCAAACATTGTTAGACGGAGAGGGCATAAACAGATAAGAGAGCTTCTGGCTAATTCGTCGAATGTAGAAGTTGATGGCT
CCATGGCAGATCAAATCAGTGACAAGGAATGCACTTCAAACCATGAACCTTGTGGTCTTATGGAAGGCTGTGATGAGAAGGGAAATAATGAGACTGGAGA
TCAAAACTCTGATCATCATAGATCGGATACTCTAGAGTCAACAGTTGATAGCTTGTCAGAGAATCATGGGTGGGAAAATGAAGTGCTTCAAAGAACAACT
CCAGACTGTGCGCCGTCATCCTCCTCCCCACCCGAGTCAGAGCTGGAGGATGAATCTGTTGGATCTGAGAAGGACAAAGATGTCTCAAACATTGATGCCG
ATGATTGGTTGTCAAGAGAAACTCCCTTTCTAAATGTTAGGAGTTTTGATGAGATAGAGGTGCCTACAGAATATTCAATCAGTTCATCTTTCACAATTGG
CTCAGGTGATTCAAAAGGTGTTGATGTTAGTGAACATAGTTGGGCACATGCGGATTCTAAGGATGATATATCATTGGAGGACAAGGTGGCAGAGTTTCTA
CATACTGGCGAGTTAGATGCGAGTGACGCTCTCAGCCATGCTGCTGCTTCGACTGCAAATGGAAAGGCACCTATGTCTCCTCTTGGTGCTGACAGTGCTC
TTAGGAATAACGATTCATCAGCACATTCTCAATCCCTTGCTGATCTTCACAAAGATGATGTTGAGCTTATTTTGTCTGATCTGCAAACAAAGGCTGAGAT
AGAGATTACAAAGGCCCAACAACTTATTGTAGAGAAAGATGCAGAATTGCTTGCTGTGGAAGAAAGTTTGTCAGATCTTGTAGAGGTTACGATCCAATAC
CGCGGGGAGGGTCAATGTGTGGAGGTGTCGGGTAGCTTTAACGGTTGGCACCACAAAATAATGATGGATTCGGATGCAGATCAGGATAAGTATCTTGATA
CATCCTCTTCAGCTGAGAAAATCAAAGAGCCAGGGAAATCGAGTAATTGGTCAACAACACTGTGGCTGTATCCTGGGGTATATGAGGTGAATAACAGAAC
TAGAATCCATGGCTGA
AA sequence
>Lus10023003 pacid=23146167 polypeptide=Lus10023003 locus=Lus10023003.g ID=Lus10023003.BGIv1.0 annot-version=v1.0
MATLSKLHCFLPSFPSRTKLFFSNHHRRHSPPQDDGLFWNIHDDHHHPFGDRSLVCACSLKSPRVKRKVKSNEELRDDIKEFLLDVGLPEGHIPSRKELI
DYGRIDLANIVRRRGHKQIRELLANSSNVEVDGSMADQISDKECTSNHEPCGLMEGCDEKGNNETGDQNSDHHRSDTLESTVDSLSENHGWENEVLQRTT
PDCAPSSSSPPESELEDESVGSEKDKDVSNIDADDWLSRETPFLNVRSFDEIEVPTEYSISSSFTIGSGDSKGVDVSEHSWAHADSKDDISLEDKVAEFL
HTGELDASDALSHAAASTANGKAPMSPLGADSALRNNDSSAHSQSLADLHKDDVELILSDLQTKAEIEITKAQQLIVEKDAELLAVEESLSDLVEVTIQY
RGEGQCVEVSGSFNGWHHKIMMDSDADQDKYLDTSSSAEKIKEPGKSSNWSTTLWLYPGVYEVNNRTRIHG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03420 5'-AMP-activated protein kinas... Lus10023003
[exp]
0 1
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Lus10012114
[exp]
1.0 0.9457
AT1G19920 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1,... Lus10033158
[exp]
2.2 0.9267
AT4G39460 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylme... Lus10005787
[exp]
3.2 0.9395
AT4G24810 Protein kinase superfamily pro... Lus10043122
[exp]
4.0 0.9198
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Lus10016274
[exp]
8.5 0.9294
AT3G03630 CS26 cysteine synthase 26 (.1) Lus10009521
[exp]
8.7 0.9339
AT3G25890 AP2_ERF CRF11 cytokinin response factor 11, ... Lus10021678
[exp]
8.9 0.9192
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Lus10010428
[exp]
9.5 0.9260
AT3G05510 Phospholipid/glycerol acyltran... Lus10029891
[exp]
11.5 0.9210
AT4G39460 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylme... Lus10006812
[exp]
12.4 0.8951

Lus10023003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.