Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006886 [exp] 203 / 5e-64 ND / Lus10027613 [exp] 143 / 1e-40 ND / Lus10007415 [exp] 122 / 2e-32 ND / Lus10042979 [exp] 106 / 3e-26 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10014851 [exp] 102 / 4e-25 ND 34 / 0.005 Lus10017800 [exp] 89 / 2e-22 ND / Lus10039353 [exp] 94 / 4e-22 ND / Lus10026444 [exp] 92 / 2e-21 ND / Lus10033096 [exp] 85 / 1e-19 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023004 pacid=23146173 polypeptide=Lus10023004 locus=Lus10023004.g ID=Lus10023004.BGIv1.0 annot-version=v1.0 ATGCCGTCACTGATGTTCTCTGGATCCATTTGTAGTGCAGACAGTGTTTATATTCGTTACACTAATTACATGCCCACTCTGGAACTCGGTGTGGACCAAA TCGTAACAGCTGAGCAGTTTCATCCTGTCCTTTGCATCCTAACTTCCATTACACGCTGCGATATTCCCCGTCAGTGCTTCTTGCACAACCACATCCCTGT GCGCCTGGTCAGTCCGTCAGATGAGAGATGTTTCAGCTTTGTTGGTGGCGACCTCCCACCCAAACTTCATCTGGCTGCACTAACTGCTGAGCACCATCTT ATGCCTCCATACAGTCATGCAAAGGCATGGTGCCTTATTAGGATTAATAGCGTCTCCCACTGCCCATCCAATGTTGTGCAAACTGGTGATCGACTAAGTT ACTCTATCATGGTATACTATGTTAATGCAACTGCAACTGCGCCCCTGCTTTTCACTGGTCCGGCTGCCACAATGCTTTTCAAAATGCATGTGCGTGAATA CAATGATTTGTCCACTACTGTCAAAGAAACTCTCTCATTTCAACTCAGGAATAAGTTCTTCATTGCAGAAGTCCAAACATGTGATCGTGTATCCAACAAC CGTACCAAATTTGTCGTGCATAATCTATGGGATCCAGCTGCTGCTTACTACTGA
AA sequence Show only first row Show all	>Lus10023004 pacid=23146173 polypeptide=Lus10023004 locus=Lus10023004.g ID=Lus10023004.BGIv1.0 annot-version=v1.0 MPSLMFSGSICSADSVYIRYTNYMPTLELGVDQIVTAEQFHPVLCILTSITRCDIPRQCFLHNHIPVRLVSPSDERCFSFVGGDLPPKLHLAALTAEHHL MPPYSHAKAWCLIRINSVSHCPSNVVQTGDRLSYSIMVYYVNATATAPLLFTGPAATMLFKMHVREYNDLSTTVKETLSFQLRNKFFIAEVQTCDRVSNN RTKFVVHNLWDPAAAYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023004 [exp]	0	1
					Lus10023005 [exp]	1.4	0.8969
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	2.4	0.8619
					Lus10019580 [exp]	5.3	0.7479
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	6.9	0.6630
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	8.1	0.7608
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10019125 [exp]	9.9	0.6385
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	11.8	0.7057
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	13.7	0.6740
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	14.1	0.7425
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	16.4	0.7281

Compare expression of checked genes

Lus10023004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.