Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023767 [exp] 172 / 6e-54 ND / Lus10034057 [exp] 123 / 1e-37 ND / Lus10016947 [exp] 118 / 1e-35 ND / Lus10006886 [exp] 126 / 2e-35 ND / Lus10007415 [exp] 79 / 8e-18 ND / Lus10038642 [exp] 63 / 3e-13 ND / Lus10007416 [exp] 64 / 8e-13 ND / Lus10026444 [exp] 55 / 2e-09 ND / Lus10027118 [exp] 52 / 6e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023005 pacid=23146132 polypeptide=Lus10023005 locus=Lus10023005.g ID=Lus10023005.BGIv1.0 annot-version=v1.0 ATGGATCTTTCCTATGATCTCAGTGTTGCACCCTCAGAATATGGCGCCTTGACTACGACCATTGCGGATCTCACTCTTGGAAGCAAAAAACTCCCATGTA TGTTCCGTCTCATCCATTTTTGGCGCACAGAGGCTATTGCCATAGGCGAGGTCCCCGCTGCAATACATACCTTGTGGATCAACCGTTCGGAAACACTTAT CCAAGGCTATACGGAGCCATCTCATACATGGGATGTGTTTGTGCTCATGAACTTGGGTACGATCTACAAAATCCGCCAACCAACTCTCATTGCACCACGT ACTGAGCCACGTGCTTGCCCGGGACATGTCTGCCTCTTCATACTTCCTGAGGACTTGCACATATCAGTGAAGAGGATCAATCGAAACCATTCTTTCCCCA TGATAACTACAACATAG
AA sequence Show only first row Show all	>Lus10023005 pacid=23146132 polypeptide=Lus10023005 locus=Lus10023005.g ID=Lus10023005.BGIv1.0 annot-version=v1.0 MDLSYDLSVAPSEYGALTTTIADLTLGSKKLPCMFRLIHFWRTEAIAIGEVPAAIHTLWINRSETLIQGYTEPSHTWDVFVLMNLGTIYKIRQPTLIAPR TEPRACPGHVCLFILPEDLHISVKRINRNHSFPMITTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023005 [exp]	0	1
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	1.0	0.9457
					Lus10023004 [exp]	1.4	0.8969
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	6.9	0.8519
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10007410 [exp]	7.1	0.7424
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	8.2	0.7937
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	9.2	0.7937
					Lus10014737 [exp]	10.1	0.7937
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	10.9	0.7937
					Lus10021773 [exp]	11.7	0.7937
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	12.4	0.7937

Compare expression of checked genes

Lus10023005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.