Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 294 / 5e-93 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10006887 [exp] 106 / 7e-24 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10023787 [exp] 102 / 6e-23 ND 44 / 3e-04 Lus10026445 [exp] 82 / 3e-16 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10023767 [exp] 78 / 1e-15 ND / Lus10030315 [exp] 77 / 2e-14 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10006918 [exp] 75 / 3e-14 ND / Lus10007681 [exp] 67 / 9e-12 ND / Lus10016946 [exp] 112 / 1e-11 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G182232 [exp] 47 / 2e-05 ND / Potri.006G172600 [exp] 47 / 2e-05 ND / Potri.001G165480 [exp] 46 / 3e-05 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 44 / 0.0003 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023006 pacid=23146156 polypeptide=Lus10023006 locus=Lus10023006.g ID=Lus10023006.BGIv1.0 annot-version=v1.0 ATGTCGGCTGCTGTCAATCTTGTCGCTCCATCTGCAGAGATTTGCTGCATGGTCTATAATCAACCAAAAATGCCTGCTAAAATGGAATTCGTTCCTCTCA CAAGCCATCTCCGCTTCTCTCACTCAAATTCTCAATTCCCATTTCAGTTACAGCAACAGATTTTTACCCAAAATCCTTCTTCTAACATTCCCTTCTCTTT CTCTCACCCAAGTCCCCGCTTCTTCTTCTTTCACCCAAAAAACCTTCTTTTACAGCCACAGATCTTTGCGCAATCATGCTTCTCCGGGACCTGTCGCTGG AAAACCCTCTGTCCGAGCTCCATCTCTACCTCCGCCATGTCTAGAAATTGGGAAACCCGTCCACCCCAGATACATTTTTCGCTTTGGGAACCATCTGGAC AAATGCCGAGGTACGACCTACCTGAGCCTGCATATCGTTGTGTTGCTACAATTCTTGATTTCGACCGCGAAAAGAATTGGTGTTATCGGGCTTGCCCCAC CTGTTCCCGAGCTGTTGTAGCAAATGGTCACGAGTACTGGTGCATTGAACATGATACAGTTCTGATAGTCGATGTGGCTTACAGGATTTCCAAAATATGG GGCTTGGTCATACCGCGGACTCAGCTTGCTGCTGCTCTCCCCCCTCCACCGCCGCCCCGCCCACCAAGCCCACCTGCACGCCATGACACACCTATCCCTC CTTATCCCAACTATGTATACCCCATCCCTACTTACAACCCACAAGCTGGATCGTCTCAAACTGCCGCTGGTCGACTAGATCCTACCACTCCTTTTCAGCT CCAACCCACTCCACGGTCGAATGTAGAAACAAATGAGACAAGCAAGCCATTAGAGAGATCCACGTCACACCATTTAACTGCCTCTAAAACAGAACACCTG GATCACTATGTTCTTTCCCAACTCCAGCCCACTCCATCGTCCCCTATTCCTCGCCGCAGTTGCAAGACACCTGCACCGCAAACCGCGCCGTACTCCAAAA CGGTGGCACCCACCACAAAACGACCTAGGAAAATGCGTGCAAGCAAACCTTCTGTTGTAAAACCAGCAACTGCTCCTAAAAAGACAGCACACGTGGCCTC TGTGACTCGATCCAATAAAATTCTGCTAGCAAAAAAAGGTCGGTCCGCACAACCACTTTCAGCCATTGCCGTTCCCAAGACACCTCCTGCAAAGCGTTCG CGCTCGATTGCACCTCCAAATCTAACAAATATGAGCTCGACTCCATCTGTCACTGTTGTCGATCATGCTGCCCCTCGAATGCCTGAAACATATACGACAG ATGATATACCTCTTGCGCTCCTGGTCCGCCAGAATCGAGCAGCTCAGCGATCATCTGCTACAACTTTTGTCCCTACTTCCTCTCAATTTACACCGGCCCA ACTGACTTCAGCTGCTTTGGCTTCATCTCCATTGTCTGTTGTTAAACAAGAGCAGCTGGCAAAGAATGCTGCTAGAAGTCCTGTTGTCCATCCATTTGGA ATGACCCTGGTCTGCCCTTGCGACCCACCTTGCCTGCAAAAACCACCGTTAGTGCTCGTAGACAGTTGTTCTCACCTTAAAAGGGTTGATCTCCCTACTC AATCGATGTACTTTTGTTTCCACAATGTTTGCTCACTATGTCTTGCCTAA
AA sequence Show only first row Show all	>Lus10023006 pacid=23146156 polypeptide=Lus10023006 locus=Lus10023006.g ID=Lus10023006.BGIv1.0 annot-version=v1.0 MSAAVNLVAPSAEICCMVYNQPKMPAKMEFVPLTSHLRFSHSNSQFPFQLQQQIFTQNPSSNIPFSFSHPSPRFFFFHPKNLLLQPQIFAQSCFSGTCRW KTLCPSSISTSAMSRNWETRPPQIHFSLWEPSGQMPRYDLPEPAYRCVATILDFDREKNWCYRACPTCSRAVVANGHEYWCIEHDTVLIVDVAYRISKIW GLVIPRTQLAAALPPPPPPRPPSPPARHDTPIPPYPNYVYPIPTYNPQAGSSQTAAGRLDPTTPFQLQPTPRSNVETNETSKPLERSTSHHLTASKTEHL DHYVLSQLQPTPSSPIPRRSCKTPAPQTAPYSKTVAPTTKRPRKMRASKPSVVKPATAPKKTAHVASVTRSNKILLAKKGRSAQPLSAIAVPKTPPAKRS RSIAPPNLTNMSSTPSVTVVDHAAPRMPETYTTDDIPLALLVRQNRAAQRSSATTFVPTSSQFTPAQLTSAALASSPLSVVKQEQLAKNAARSPVVHPFG MTLVCPCDPPCLQKPPLVLVDSCSHLKRVDLPTQSMYFCFHNVCSLCLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023006 [exp]	0	1
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10035652 [exp]	3.5	0.8767
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	6.9	0.8813
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	11.4	0.8743
AT2G42140			VQ motif-containing protein (....		Lus10004172 [exp]	12.0	0.8713
					Lus10000100 [exp]	14.0	0.9028
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	36.9	0.8610
					Lus10004442 [exp]	38.4	0.8749
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018378 [exp]	42.8	0.8628
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	53.9	0.8083
AT5G02640			unknown protein		Lus10023327 [exp]	64.9	0.8281

Compare expression of checked genes

Lus10023006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.