Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36880 723 / 0 MAT3 methionine adenosyltransferase 3 (.1.2) AT3G17390 694 / 0 MAT4, SAMS3, MTO3 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) AT4G01850 691 / 0 AtSAM2, SAM-2, MAT2 S-adenosylmethionine synthetase 2 (.1.2) AT1G02500 689 / 0 METK1, AtSAM1, SAM-1, MAT1, SAM1 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001395 [exp] 759 / 0 AT2G36880 723 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10013828 [exp] 749 / 0 AT2G36880 725 / 0.0 methionine adenosyltransferase 3 (.1.2) Lus10038044 [exp] 707 / 0 AT3G17390 736 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10009985 [exp] 707 / 0 AT3G17390 735 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10004522 [exp] 697 / 0 AT3G17390 739 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Lus10010070 [exp] 696 / 0 AT4G01850 739 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Lus10026541 [exp] 491 / 9e-176 AT2G36880 474 / 5e-169 methionine adenosyltransferase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G123200 [exp] 727 / 0 AT2G36880 716 / 0.0 methionine adenosyltransferase 3 (.1.2) Potri.008G099300 [exp] 698 / 0 AT3G17390 733 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.013G004100 [exp] 696 / 0 AT3G17390 737 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE 3, METHIONINE OVER-ACCUMULATOR 3, METHIONINE ADENOSYLTRANSFERASE 4, S-adenosylmethionine synthetase family protein (.1) Potri.014G114700 [exp] 693 / 0 AT4G01850 744 / 0.0 S-adenosylmethionine synthetase 2 (.1.2) Potri.010G153500 [exp] 691 / 0 AT1G02500 730 / 0.0 S-ADENOSYLMETHIONINE SYNTHETASE-1, S-adenosylmethionine synthetase 1 (.1.2) Potri.002G189200 [exp] 690 / 0 AT4G01850 741 / 0.0 S-adenosylmethionine synthetase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02772 [flax] [poplar] S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02773 [flax] [poplar] S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF00438 [flax] [poplar] S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10023007 pacid=23146168 polypeptide=Lus10023007 locus=Lus10023007.g ID=Lus10023007.BGIv1.0 annot-version=v1.0 ATGGAAACTTTTCTGTTCACATCCGAGTCCGTTAACGAAGGGCATCCAGACAAAATCTGCGATCAGGTCTCCGATGCTATCCTCGACGCCTGCTTGGAGC AAGATCCTGAAAGCAAGGTAGCATGCGAGACCTGTACAAAGACCAACATGGTCATGGTATTCGGCGAGATCACCACCAAGGCTAAAGTGAACTACGAGAA GATCGTGAGAGACACCTGCAGAGGTATTGGATTCACATCTGCCGAAGTGGGTCTTGATGCCGACAAGTGTAAAGTACTTGTCAACATTGAGCAGCAGAGT CCTGATATTGCTCAGGGTGTCCATGGCCATCTCTCCAAGAAGCCTGAAGATATTGGAGCTGGTGATCAGGGTCATATGTTTGGCTATGCCACCGATGAAA CCCCTGAGTTAATGCCACTGACTCACGTTCTCGCGACCAAGCTTGGAGCTAAGCTCACTGAGGTGAGAAAGAACAAGACTTGCCCTTGGTTGAGACCTGA CGGTAAGACCCAGGTCACAGTTGAGTATAAAAACGACAAAGGAGCCATGGTTCCAGTGAGAGTCCACACTGTTCTCATCTCAACTCAGCATGATGAGACT GTCACCAATGACCAAATCGCCAAGGACTTGAAAGACCACGTCATCAAGCCTGTGATCCCTTCTCAGTATCTTGACGACAAGACTATCTTCCATTTGAACC CTTCGGGCCGATTTGTTATAGGAGGACCTCATGGAGATGCAGGGCTAACTGGCAGGAAGATCATCATTGATACCTATGGTGGATGGGGTGCTCATGGTGG TGGTGCTTTCTCCGGTAAAGACCCCACTAAGGTGGATCGGAGTGGTGCCTACATTGTTAGGCAAGCAGCCAAGAGTATTGTGGCATCTGGGCTCGCTCGC CGCTGCATTGTGCAGGTCTCTTACGCTATTGGTGTCCCTGAGCCATTGTCTGTCTTTGTCGACACTTATAAGACAGGAAAGATCCCAGACAAGGACATCT TGGGATTGATCAAGGAGAACTTCGATTTCAGACCTGGAATGATCTCAATCAACCTTGACTTGAAGAGAGGAGGCACGTTCAGGTACCAGAAGACTGCTGC TTACGGCCATTTCGGACGTGAAGACCCTGATTTCACCTGGGAGACTGTCAAGCAGCTCAAGCCTAAAGCTTAG
AA sequence Show only first row Show all	>Lus10023007 pacid=23146168 polypeptide=Lus10023007 locus=Lus10023007.g ID=Lus10023007.BGIv1.0 annot-version=v1.0 METFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFTSAEVGLDADKCKVLVNIEQQS PDIAQGVHGHLSKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYKNDKGAMVPVRVHTVLISTQHDET VTNDQIAKDLKDHVIKPVIPSQYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR RCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILGLIKENFDFRPGMISINLDLKRGGTFRYQKTAAYGHFGREDPDFTWETVKQLKPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	0	1
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	5.5	0.7878
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	9.5	0.7697
AT2G32235			unknown protein		Lus10008093 [exp]	10.0	0.7703
					Lus10017936 [exp]	10.6	0.7693
AT3G50610			unknown protein		Lus10009346 [exp]	15.4	0.7933
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	62.5	0.7152
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10040560 [exp]	69.1	0.6920
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040933 [exp]	69.6	0.7316
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	119.1	0.6895
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10018922 [exp]	167.6	0.6834

Compare expression of checked genes

Lus10023007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.