Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28570 90 / 1e-20 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G03980 75 / 2e-15 SGNH hydrolase-type esterase superfamily protein (.1) AT1G28600 66 / 6e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28650 66 / 6e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G27360 61 / 2e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28670 61 / 2e-10 ARAB-1 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03610 61 / 3e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71120 58 / 2e-09 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT5G45910 58 / 2e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45950 57 / 4e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002389 [exp] 152 / 2e-43 AT3G48460 145 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012693 [exp] 136 / 7e-36 AT1G25270 141 / 7e-37 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019947 [exp] 82 / 1e-17 AT1G28580 300 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10020657 [exp] 72 / 1e-13 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015242 [exp] 69 / 3e-13 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10009455 [exp] 68 / 8e-13 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10015477 [exp] 66 / 5e-12 AT1G28600 239 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013938 [exp] 65 / 2e-11 AT1G28590 367 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011338 [exp] 64 / 2e-11 AT1G28600 177 / 3e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015200 [exp] 87 / 4e-19 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024933 [exp] 76 / 1e-15 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 75 / 3e-15 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 74 / 6e-15 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 74 / 6e-15 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024300 [exp] 72 / 3e-14 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 70 / 2e-13 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G225100 [exp] 69 / 4e-13 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G054400 [exp] 60 / 4e-10 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G064100 [exp] 58 / 9e-10 AT1G28580 221 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10023008 pacid=23146139 polypeptide=Lus10023008 locus=Lus10023008.g ID=Lus10023008.BGIv1.0 annot-version=v1.0 ATGGTTTACTATCCATCTCCCCTTGCTACGATCTTCATCTTTTTCCTTCTCCTTACCACTCATAATTCGTCTTGCCACGCCAAGTTACGACCCTTGGAGG GCTGCGACATCAAGGCAATATACAATTTCGGAGATTCGCTTTCCCACACAGGGAACGCTCTTGTTGAGTTCCCGAATGCCTACTGTGGTCGTTTTCCATA CGGCATGACCACCAATCCTCATCACCCAACTGGCAGATTCTGCGATGGATACTTGATCATCGACCACATCGGTCGTCGGGAGCATCTGGAATCTTCCTTG TTCGTGGTAGGAGGTGGAGGGAATGATTACGGCAACATTCAGGGTTCCGATCTTCCCTACTTGGAGCAAAAGACGCTCCCCCTCATACCCGATGTGCTTG CAGCCATGACATCATATATCAAAAATCTTATAAAGGAGTATGGAGCTACGAAAGTAGTTGCAACTGGAGTTTATGAAGGTGGGTGCATGGTGGATGGGAA TTTTCATGACAACAAAACCCACTGCAATGCGACCAAAAACGCCTTGCACATTCTTCACAACAACCTACTCCAGCAAGAGCTCCAACTCCTTCAAGACCAG TTCCCCAACGTCCGTATTGTTTACGGTGACATTTGGGGAGCGGCCCAGTGGCTCTTTGACCACTTTTGGTCCCTAGGGTATCACTACCCTAATTACGTTG GGTGCTGTGGAAACTCTACTATGGCGTGCGGGTCGTCCAGTGATGCGCCCTACTGCCGAAACCCAAATGAGTACATGTTCTGGGACAAATACCATATGAC TGACCATTCGTATCTCCTCATCTCCAACATATTGATTCCCCAGTTGTCTTCCAGACTACACTGCGATAGAGTAGTTACGTAG
AA sequence Show only first row Show all	>Lus10023008 pacid=23146139 polypeptide=Lus10023008 locus=Lus10023008.g ID=Lus10023008.BGIv1.0 annot-version=v1.0 MVYYPSPLATIFIFFLLLTTHNSSCHAKLRPLEGCDIKAIYNFGDSLSHTGNALVEFPNAYCGRFPYGMTTNPHHPTGRFCDGYLIIDHIGRREHLESSL FVVGGGGNDYGNIQGSDLPYLEQKTLPLIPDVLAAMTSYIKNLIKEYGATKVVATGVYEGGCMVDGNFHDNKTHCNATKNALHILHNNLLQQELQLLQDQ FPNVRIVYGDIWGAAQWLFDHFWSLGYHYPNYVGCCGNSTMACGSSSDAPYCRNPNEYMFWDKYHMTDHSYLLISNILIPQLSSRLHCDRVVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27360			GDSL-like Lipase/Acylhydrolase...		Lus10023008 [exp]	0	1

Compare expression of checked genes

Lus10023008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.