Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36870 416 / 1e-147 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) AT3G44990 342 / 1e-118 AtXTH31, XTH31, ATXTR8, XTR8 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) AT1G14720 199 / 5e-62 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT1G10550 198 / 7e-62 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT1G32170 196 / 1e-60 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G14130 193 / 3e-60 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT3G23730 188 / 6e-58 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57550 185 / 7e-57 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT2G01850 186 / 9e-57 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT3G25050 184 / 2e-56 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001396 [exp] 519 / 0 AT2G36870 460 / 8e-165 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013822 [exp] 470 / 8e-169 AT2G36870 444 / 1e-158 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026535 [exp] 464 / 2e-166 AT2G36870 444 / 9e-159 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10026536 [exp] 364 / 2e-126 AT2G36870 402 / 1e-141 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 362 / 4e-126 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 357 / 4e-124 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10037377 [exp] 350 / 1e-121 AT2G36870 422 / 9e-150 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 350 / 1e-121 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10013823 [exp] 281 / 1e-95 AT2G36870 301 / 7e-104 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122900 [exp] 446 / 1e-159 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 443 / 2e-158 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.009G006600 [exp] 348 / 1e-120 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.005G201200 [exp] 199 / 3e-62 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 198 / 4e-62 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.003G097300 [exp] 200 / 6e-62 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.005G201250 [exp] 198 / 6e-62 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G115000 [exp] 198 / 1e-61 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.011G077320 [exp] 196 / 3e-61 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.009G163850 [exp] 196 / 5e-61 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10023009 pacid=23146127 polypeptide=Lus10023009 locus=Lus10023009.g ID=Lus10023009.BGIv1.0 annot-version=v1.0 ATGGCAATATCGTCTTTTTCTTCTTTAACCCTTCTTCCATTATTGCTCCTTCTGGTTCTTTCTTCATCCATCACCAATGCTAGGGCTAGGCCGCCCCGTC CTGGCTACCGGCCCAGCTTCCGGTTCAGATCAATGCCTTTCTACAGAGGCTACAGAACCCTCTGGGGCCAGACCCATCAACGAGTCGACCGCAATGGAGT CACCATTTGGTTGGATAAAACTTCTGGAAGCGGGTTCAAGTCAGTGAAGCCATTTCGATCTGGGTATTTCGGTACTTCCATTAAGCTCCAATCCGGATAC ACTGCTGGAGTTAACACTGCTTTCTATCTATCAAATGCAGAAGCTCATCCAGGACACCATGATGAAGTGGACATTGAATTCCTGGGGAAGACATTTGGTG AGCCTTACACTTTACAGACCAACGTCTACATTAGGGGAAGTGGGGATGGAAGAATCATTGGGAGAGAGATGAAGTTTCATTTATGGTTCGATCCCACCAA AAGATTCCACCATTACGCCATCATTTGGAACCCCAGAGAAATCATATTCCTAGTGGATGATGTGCCGATAAGGAGGTATCCGAGGAAAACTGCGGCAACA TTTCCGTTAAGGCCAATGTGGATATATGGTTCGATATGGGATGCATCGGCTTGGGCCACTGACGATGGTAAATACAAAGCGGACTATAAGTACCAACCCT TTGTTGCGAACTACAAGAACTTCAAGGCATCGGGGTGCACTGCTTACTCGCCACGATGGTGCCGGCCGGCCTCAGCATCGCCGTACCGGACAGGTGGGCT GACGAGGCAGCAGTATAATTCGCTGAGATGGGTGCAGAAGTACCATATGGTGTACAACTATTGTTGGGATTCCTCAAGGGACCATTCACTAACCCCGGAG TGCTGGTTGTGA
AA sequence Show only first row Show all	>Lus10023009 pacid=23146127 polypeptide=Lus10023009 locus=Lus10023009.g ID=Lus10023009.BGIv1.0 annot-version=v1.0 MAISSFSSLTLLPLLLLLVLSSSITNARARPPRPGYRPSFRFRSMPFYRGYRTLWGQTHQRVDRNGVTIWLDKTSGSGFKSVKPFRSGYFGTSIKLQSGY TAGVNTAFYLSNAEAHPGHHDEVDIEFLGKTFGEPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKRFHHYAIIWNPREIIFLVDDVPIRRYPRKTAAT FPLRPMWIYGSIWDASAWATDDGKYKADYKYQPFVANYKNFKASGCTAYSPRWCRPASASPYRTGGLTRQQYNSLRWVQKYHMVYNYCWDSSRDHSLTPE CWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	0	1
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	1.4	0.9241
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	2.0	0.9112
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	3.0	0.9022
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	3.2	0.8698
AT1G18610			Galactose oxidase/kelch repeat...		Lus10010913 [exp]	4.5	0.8711
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	6.0	0.8688
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10034061 [exp]	7.9	0.8114
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	11.2	0.8590
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	13.0	0.8447
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	13.7	0.8672

Compare expression of checked genes

Lus10023009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.