Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023010 pacid=23146107 polypeptide=Lus10023010 locus=Lus10023010.g ID=Lus10023010.BGIv1.0 annot-version=v1.0 ATGTCAAAAACAAAAACAAAACCAAACCGTTGGGTTGCGCTTAAATCCAATAGTACTAGGATAGTCATCGCAAGGGAAAACGTTGTGGCTGGTGACCAAA ACAGACGGAGGAAAAATTCTGAAGCAGACGGAGGACCACAGAAAATTCCCTCCGATTCGCCGGCCAGAATGAAATCCTTAATTCCGTCAATTATCCGCTG TCCAATTGCGAATTTAAAGATACCGTATTGCGATGGGAAGACGGAAGAAGTCAACCATTCATGGAGGAGAGGAGAGAAGGTCGGAGATGAGGCGAACAAG ATTGAAGGAGAGAAAGAAGAGGAGAAGGAGATAGCAGAGGACGGCGGCGAAGCGGAAGAGGAGAAGGAAGAGGAAGAGAGCAACGACAATTGA
AA sequence Show only first row Show all	>Lus10023010 pacid=23146107 polypeptide=Lus10023010 locus=Lus10023010.g ID=Lus10023010.BGIv1.0 annot-version=v1.0 MSKTKTKPNRWVALKSNSTRIVIARENVVAGDQNRRRKNSEADGGPQKIPSDSPARMKSLIPSIIRCPIANLKIPYCDGKTEEVNHSWRRGEKVGDEANK IEGEKEEEKEIAEDGGEAEEEKEEEESNDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023010 [exp]	0	1
					Lus10007802 [exp]	2.6	0.9301
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	4.7	0.8992
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	4.9	0.9218
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	5.0	0.9170
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	5.3	0.9283
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	6.0	0.9067
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	6.5	0.9160
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	6.9	0.8987
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	8.2	0.9177
AT1G12650			unknown protein		Lus10005657 [exp]	8.4	0.8554

Compare expression of checked genes

Lus10023010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.