Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09870 71 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT2G28085 49 / 4e-08 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001398 [exp] 246 / 3e-85 AT3G09870 97 / 9e-27 SAUR-like auxin-responsive protein family (.1) Lus10004014 [exp] 145 / 1e-45 AT3G09870 101 / 1e-28 SAUR-like auxin-responsive protein family (.1) Lus10030263 [exp] 138 / 8e-43 AT3G09870 100 / 4e-28 SAUR-like auxin-responsive protein family (.1) Lus10013819 [exp] 131 / 4e-40 AT3G09870 92 / 7e-25 SAUR-like auxin-responsive protein family (.1) Lus10026531 [exp] 127 / 2e-38 AT3G09870 89 / 7e-24 SAUR-like auxin-responsive protein family (.1) Lus10001397 [exp] 65 / 3e-14 AT2G28085 69 / 8e-16 SAUR-like auxin-responsive protein family (.1) Lus10026532 [exp] 61 / 1e-12 AT3G09870 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) Lus10021436 [exp] 56 / 2e-10 AT2G28085 117 / 6e-35 SAUR-like auxin-responsive protein family (.1) Lus10023011 [exp] 54 / 2e-10 AT3G09870 59 / 1e-12 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092400 [exp] 107 / 7e-31 AT3G09870 108 / 8e-32 SAUR-like auxin-responsive protein family (.1) Potri.006G125100 [exp] 107 / 9e-31 AT3G09870 103 / 2e-29 SAUR-like auxin-responsive protein family (.1) Potri.010G226400 [exp] 60 / 3e-12 AT2G28085 51 / 3e-09 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 44 / 3e-06 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 43 / 8e-06 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 40 / 8e-05 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10023012 pacid=23146160 polypeptide=Lus10023012 locus=Lus10023012.g ID=Lus10023012.BGIv1.0 annot-version=v1.0 ATGCTGAACAAGGAAGAAAGCATCCAAGGCTTGGTGATGCTCAAGCTTTTCACAAGGAAGGTGCAAAGGGCTCTACTGCACAAGGCATCCAGAAGGGGGC AGAGCCTGAAATGCATTCCAGAGTTAGAAGAAGACAATCAGTCCAGGAAAGTTGTTCCAAACGATGTGAAGAAAGGGCAGTTTGCCGTCACAGCAATCAA AGATGGGAAAGCAAAGAGGTTCACTGTAAAGTTGGATTACCTGAATGATCCAGAGTTCTTGAGTTTGCTGGAACTGGCTGAAGAGGAATTTGGGTTCCGG CAGGAAGGCGTTCTTGCTGTCCCTTGTCACCCCGAGGAGCTTCAGAAGATTCTACGAGGAGGGAAAATGAGAAGAACAAGTACAGATCGGGGGAAAATGA GAAGAACAAGTACAGATTGGTAG
AA sequence Show only first row Show all	>Lus10023012 pacid=23146160 polypeptide=Lus10023012 locus=Lus10023012.g ID=Lus10023012.BGIv1.0 annot-version=v1.0 MLNKEESIQGLVMLKLFTRKVQRALLHKASRRGQSLKCIPELEEDNQSRKVVPNDVKKGQFAVTAIKDGKAKRFTVKLDYLNDPEFLSLLELAEEEFGFR QEGVLAVPCHPEELQKILRGGKMRRTSTDRGKMRRTSTDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023012 [exp]	0	1
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	6.5	0.8129
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	7.3	0.8231
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	15.0	0.7818
AT1G67050			unknown protein		Lus10028485 [exp]	19.6	0.7863
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10008444 [exp]	26.8	0.7577
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	29.2	0.8142
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	33.0	0.8084
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	34.6	0.7825
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	35.0	0.8136
AT1G26220			Acyl-CoA N-acyltransferases (N...		Lus10013061 [exp]	36.6	0.8034

Compare expression of checked genes

Lus10023012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.