Plant FIBer expression Database

Lus10023013 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52970 282 / 4e-97 thylakoid lumen 15.0 kDa protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001399
[exp]
305 / 5e-106 AT5G52970 278 / 3e-95 thylakoid lumen 15.0 kDa protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G092300
[exp]
296 / 1e-102 AT5G52970 292 / 5e-101 thylakoid lumen 15.0 kDa protein (.1)
PFAM info
Representative CDS sequence
>Lus10023013 pacid=23146112 polypeptide=Lus10023013 locus=Lus10023013.g ID=Lus10023013.BGIv1.0 annot-version=v1.0
ATGGCATTTCTTTCCACCTTTAAACCTCCTTCCTCGTCCTCTACATTTCCTTTCCCCATTGCCGCTTCTTCCCATCCTCCATTGTCGCGCTCTCAACTCC
GATGTCTGAGCAAACCCGGCAATTGGGTCCTCGATTTGCCATCCAAATCGTTGAGTTTGCTGCTCTCTGGGGCTCTCACGCTTGGCCTCTCTCTTTCAGG
CCCGGGTTTTGCAGAGGCAAAAGTCGGAGTTAACAAGCCAGAATTGCTTCCCAAAGAGTTTACGACTGTTATAGATGTCGCTGGATTCCTCTCCGATGGC
CAGGAAAAAAGACTTGCTCAAGAGATTTCTGAAATTGAAAAGGACACTGGATTCAAGTTGAGAGTTTTAGCTCAAAATTATCCTGACACTCCAGGGCTGG
CAATCCGAGATTTCTGGGATGTTGATGATAGGACCATCGTATTCGTTGCCGATCCTACTTTTGGAAATATTCTTAACTTCAATGTTGGTGCTTCTGTCGA
TCTGGATATTCCACGTAGCTTCTGGAGCCGGCTGGCGGGGAAGTATGGGAACATCTTTTACTGGAAAGAGAAGGGCGAAGATGCATCTATTGAAGCTGCT
GTGATGGCAATATCTAGTTGCTTGAGTGAGCCAGTTGGATCAAATAACTGCTCTGAGGTTAAATAA
AA sequence
>Lus10023013 pacid=23146112 polypeptide=Lus10023013 locus=Lus10023013.g ID=Lus10023013.BGIv1.0 annot-version=v1.0
MAFLSTFKPPSSSSTFPFPIAASSHPPLSRSQLRCLSKPGNWVLDLPSKSLSLLLSGALTLGLSLSGPGFAEAKVGVNKPELLPKEFTTVIDVAGFLSDG
QEKRLAQEISEIEKDTGFKLRVLAQNYPDTPGLAIRDFWDVDDRTIVFVADPTFGNILNFNVGASVDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIEAA
VMAISSCLSEPVGSNNCSEVK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52970 thylakoid lumen 15.0 kDa prote... Lus10023013
[exp]
0 1
AT1G27510 Protein of unknown function (D... Lus10039967
[exp]
1.4 0.9272
AT3G17470 ATCRSH Ca2+-activated RelA/spot homol... Lus10042894
[exp]
3.5 0.9006
AT5G35100 Cyclophilin-like peptidyl-prol... Lus10040007
[exp]
3.9 0.9092
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Lus10008721
[exp]
5.5 0.9254
AT5G35100 Cyclophilin-like peptidyl-prol... Lus10040008
[exp]
6.0 0.9033
AT5G64480 unknown protein Lus10007107
[exp]
6.5 0.9084
AT1G66330 senescence-associated family p... Lus10004049
[exp]
9.6 0.8849
AT2G38780 unknown protein Lus10019776
[exp]
10.6 0.8945
AT3G27690 LHCB2.3, LHCB2:... LIGHT-HARVESTING CHLOROPHYLL B... Lus10001741
[exp]
10.7 0.9085
AT4G09040 RNA-binding (RRM/RBD/RNP motif... Lus10041138
[exp]
11.5 0.9131

Lus10023013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.