Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 110 / 7e-30 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 110 / 8e-30 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 107 / 4e-29 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 107 / 6e-29 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 106 / 1e-28 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 106 / 1e-28 HSP70B heat shock protein 70B (.1) AT5G02490 105 / 4e-28 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 104 / 7e-28 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 103 / 8e-28 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G09590 103 / 1e-27 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007777 [exp] 122 / 8e-36 AT5G28540 358 / 8e-121 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013551 [exp] 124 / 1e-34 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 123 / 2e-34 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10028061 [exp] 120 / 1e-33 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026480 [exp] 114 / 3e-33 AT1G09080 234 / 2e-73 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10021345 [exp] 117 / 1e-32 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 115 / 9e-32 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10020977 [exp] 114 / 2e-31 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 114 / 2e-31 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 112 / 9e-31 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 110 / 8e-30 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G143600 [exp] 108 / 3e-29 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 108 / 3e-29 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 107 / 9e-29 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 106 / 2e-28 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 105 / 4e-28 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 105 / 4e-28 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 105 / 4e-28 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 105 / 5e-28 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10023015 pacid=23146137 polypeptide=Lus10023015 locus=Lus10023015.g ID=Lus10023015.BGIv1.0 annot-version=v1.0 ATGGTTTTGGGGATGATGAAGGAAACCGCCGAATCTTACCTGGGAAATCCAGTTGCCGGCGCCGTAGTAACAGTTCCTGCTTACTTCAACGACGCACAAA GGCAAGCTACTAAGGACGCCGGCACAATCGCCGGCCTCAACGTCCTCCGGATCATTAACGAGCCTACCGCCGGCGCCATTGCCTACGGTCTGGAAAACCT AAATGGGAAGACCAAAAGGAATAGTTTGGTGTAA
AA sequence Show only first row Show all	>Lus10023015 pacid=23146137 polypeptide=Lus10023015 locus=Lus10023015.g ID=Lus10023015.BGIv1.0 annot-version=v1.0 MVLGMMKETAESYLGNPVAGAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIINEPTAGAIAYGLENLNGKTKRNSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023015 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	7.6	0.8871
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	19.7	0.8760
AT1G76740			unknown protein		Lus10028114 [exp]	21.5	0.8698
AT3G63430			unknown protein		Lus10003090 [exp]	25.4	0.8546
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	30.0	0.8685
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	30.3	0.8369
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	32.9	0.8471
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	35.1	0.8642
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	36.1	0.8617
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	41.4	0.8637

Compare expression of checked genes

Lus10023015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.