Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 247 / 6e-77 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 243 / 1e-75 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 224 / 3e-68 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 220 / 6e-67 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 218 / 6e-66 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02500 216 / 1e-65 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 215 / 4e-65 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 208 / 1e-62 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 207 / 5e-62 HSP70B heat shock protein 70B (.1) AT5G09590 145 / 4e-39 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015483 [exp] 317 / 2e-104 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 295 / 6e-96 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 271 / 1e-86 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10032430 [exp] 246 / 6e-76 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10028061 [exp] 243 / 7e-76 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 241 / 9e-75 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023043 [exp] 247 / 4e-74 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017022 [exp] 238 / 1e-73 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10007778 [exp] 225 / 3e-72 AT5G42020 318 / 5e-104 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087500 [exp] 256 / 2e-80 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 255 / 5e-80 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 252 / 5e-79 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 249 / 8e-78 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G206600 [exp] 221 / 3e-67 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 218 / 5e-66 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 215 / 8e-66 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 217 / 1e-65 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 216 / 1e-65 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 215 / 7e-65 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10023016 pacid=23146174 polypeptide=Lus10023016 locus=Lus10023016.g ID=Lus10023016.BGIv1.0 annot-version=v1.0 ATGGACTTCTTGGAGCCATTGACGAGATCGAAATTCGAAGAGTTGAATATGGATCTATTCAAGAAAACATTAGAGGTGGTGAAGGCAACATTAGAAGAAG ATGGTAAGTTAGACAAGAGTGAAATAGAAGCAATCGTGTTGGTGGGAGGAAGCCCAAGGATTCTTAAGCTGAGGGAAATGTTGAAAGAGATGTTTGATGG GAAGGAGCCAAGCAAATCTGTGAACCCAGATGAAGCAGTTGCTTATGGTGCTGCTGTTCTTGGAGCCGAACTTAGCGGCCGAGCTTCCAGTATGCATGTG CGGTGCTCACTTGGAGCAGGTGTTTATTTGGTTGATGTCACTCCTTTAAGTTTGGGGATTTTGGTCGATGGAGACCTCATGAGCATAGTATTTCAAGGTG AAAGACCTCTGACCAAGGACTGTCTGAAGCTCGGAAGTTTTGATCTTAGAGACATTCCCATAGGCCCTGGTGGAGTTGGTTCTGCGGAGGTTACATTTGA GATCGATGGAGATGAAATTCTGAGCGTAACGGCACAAAAGAAGACAACAGGAAATTCAGAATCCCTCACTATCAGCAGCTTCAAGGGGAATTTAAGTGTG GAGGAGGAGGTGGAGAGGATGGTAATAGAGGCAAAGCAGATGGCTGAGAAAGACAAGGTTGACAAGGCCCGTATCGAGGCCAAAACCAGCTTAGAAGGAT ACATTTATGGTGTGAGGTACGGATTGGATAGTTGGGATGGCGATAAGACGATCGAGGAGAGTGCGTTGGGAGAAGTTTCGAGTTGGTTGGATGCTAACCC GAATACTTCCAAGCAAGATTATGAGGAGAGGATGCAGAAGCTAGCCAATATATGGAATCCTATTGCACGAAGCATCAATGTTGCGAGATAA
AA sequence Show only first row Show all	>Lus10023016 pacid=23146174 polypeptide=Lus10023016 locus=Lus10023016.g ID=Lus10023016.BGIv1.0 annot-version=v1.0 MDFLEPLTRSKFEELNMDLFKKTLEVVKATLEEDGKLDKSEIEAIVLVGGSPRILKLREMLKEMFDGKEPSKSVNPDEAVAYGAAVLGAELSGRASSMHV RCSLGAGVYLVDVTPLSLGILVDGDLMSIVFQGERPLTKDCLKLGSFDLRDIPIGPGGVGSAEVTFEIDGDEILSVTAQKKTTGNSESLTISSFKGNLSV EEEVERMVIEAKQMAEKDKVDKARIEAKTSLEGYIYGVRYGLDSWDGDKTIEESALGEVSSWLDANPNTSKQDYEERMQKLANIWNPIARSINVAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	0	1
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	5.7	0.8660
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	7.3	0.8645
AT1G10890			unknown protein		Lus10043141 [exp]	8.1	0.8577
AT1G04985			unknown protein		Lus10015157 [exp]	8.2	0.8639
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	11.4	0.8660
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10023781 [exp]	14.1	0.8294
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10000043 [exp]	17.0	0.7889
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	17.0	0.8479
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	17.2	0.8030
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	23.2	0.8267

Compare expression of checked genes

Lus10023016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.