Plant FIBer expression Database

Lus10023017 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15420 102 / 5e-29 Transcription factor TFIIIC, tau55-related protein (.1)
AT1G80745 100 / 7e-28 Transcription factor TFIIIC, tau55-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001401
[exp]
267 / 2e-93 AT3G15420 105 / 4e-30 Transcription factor TFIIIC, tau55-related protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G121800
[exp]
166 / 1e-53 AT3G15420 93 / 3e-25 Transcription factor TFIIIC, tau55-related protein (.1)
Potri.001G402700
[exp]
87 / 4e-23 AT3G15420 61 / 1e-13 Transcription factor TFIIIC, tau55-related protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10419 TFIIIC_sub6 TFIIIC subunit triple barrel domain
Representative CDS sequence
>Lus10023017 pacid=23146117 polypeptide=Lus10023017 locus=Lus10023017.g ID=Lus10023017.BGIv1.0 annot-version=v1.0
ATGGAGGCAGGGTTAGCAGAGCATGGAGATACCCAGTCCGAAGAAGAATATGTACTGCTTGACCTTGATGCTGTGATGGAAAACGTTAACATTCGAGCAG
ATATGCCATATGTTCTTACGGGTCTGGACACATTAAACCCAATCTTGATCATAGATGGAAAATGGAAGCTGATTGGAGAATATGATGAGACAATAGGAAC
TTGCTTGGTGTTCTCGGAAAATGGGGAAAAGGGACATGCGTTGCATGAAGAGACAATACCATCAGAAGCAAATCTATCTTCAGGGACATGCATAGTTGAT
CCAAATCAAGGCCCGGGCAAAGAAGTTAAACCAGTTGGTCAGCTCCAAAAGGTCCTCAAGTTCAGGTTGTTACTGGATGAAGACGCTGAAGATCATCATG
CATTGAATGAAGGAAATGTTTTAAACCCATTGAGTGCAGAAGGCCAAGAACACATATGA
AA sequence
>Lus10023017 pacid=23146117 polypeptide=Lus10023017 locus=Lus10023017.g ID=Lus10023017.BGIv1.0 annot-version=v1.0
MEAGLAEHGDTQSEEEYVLLDLDAVMENVNIRADMPYVLTGLDTLNPILIIDGKWKLIGEYDETIGTCLVFSENGEKGHALHEETIPSEANLSSGTCIVD
PNQGPGKEVKPVGQLQKVLKFRLLLDEDAEDHHALNEGNVLNPLSAEGQEHI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15420 Transcription factor TFIIIC, t... Lus10023017
[exp]
0 1
Lus10011342
[exp]
8.7 0.8231
AT1G67540 unknown protein Lus10037003
[exp]
9.8 0.8169
AT2G37460 nodulin MtN21 /EamA-like trans... Lus10024425
[exp]
9.9 0.8032
AT5G06060 NAD(P)-binding Rossmann-fold s... Lus10040735
[exp]
10.4 0.8398
AT1G23070 Protein of unknown function (D... Lus10035832
[exp]
14.0 0.7391
AT1G58340 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWAR... Lus10007231
[exp]
14.7 0.8345
AT5G55560 Protein kinase superfamily pro... Lus10016594
[exp]
20.1 0.8164
AT3G48010 ATCNGC16 cyclic nucleotide-gated channe... Lus10002363
[exp]
20.7 0.7735
AT1G03440 Leucine-rich repeat (LRR) fami... Lus10029622
[exp]
21.9 0.7781
AT2G36640 ATECP63 embryonic cell protein 63 (.1) Lus10035586
[exp]
22.3 0.7953

Lus10023017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.