Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03330 291 / 5e-97 Cysteine proteinases superfamily protein (.1.2) AT5G04250 252 / 1e-81 Cysteine proteinases superfamily protein (.1.2) AT3G02070 239 / 2e-78 Cysteine proteinases superfamily protein (.1) AT3G22260 198 / 5e-62 Cysteine proteinases superfamily protein (.1.2.3) AT2G39320 100 / 3e-25 Cysteine proteinases superfamily protein (.1) AT5G67170 76 / 4e-15 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 56 / 2e-08 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001404 [exp] 570 / 0 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 356 / 3e-122 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 354 / 9e-122 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10038708 [exp] 260 / 1e-84 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 257 / 3e-83 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 234 / 1e-74 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 197 / 7e-62 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 198 / 2e-61 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10003816 [exp] 169 / 1e-50 AT3G22260 298 / 2e-103 Cysteine proteinases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125900 [exp] 371 / 2e-128 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.016G094700 [exp] 370 / 4e-128 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 267 / 4e-87 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 259 / 5e-84 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.014G140200 [exp] 230 / 1e-74 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.016G019700 [exp] 221 / 5e-71 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.008G036900 [exp] 212 / 4e-68 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.006G021700 [exp] 210 / 1e-66 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.005G140500 [exp] 75 / 1e-14 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.009G160100 [exp] 53 / 1e-07 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10023019 pacid=23146123 polypeptide=Lus10023019 locus=Lus10023019.g ID=Lus10023019.BGIv1.0 annot-version=v1.0 ATGGCTGCTTACGATCACGATCCTGATGTCTATCAGTGGGGATTGAGCCTTCTCGAACCCAACCCTCCCTATTACCCCGGGTACTATGGCGGCGGAGATG TAATTCAAAACGACTATACCTCTTCTGCTCCTCCTCCTCATCATCACCCTGGACATTACGTTGCAGATTTTTACATTACTGACAATACCCACGTGGAGAA CGACGAGATCATCGCCCGTACTCTCCAGGACGATTTCTCCCAGCTTGCTGTAACCGAATCGTCCAACTATTCCCACCAAGAAGGAGCTGAGGATCAAGAA CACCACCGCTCGGCTTATTATGGAGGAGGCAGCGAATGGCCCACTACCTCAACGAGTTACAATTCGTCCGGTGAGGAGTCGTCTGATGATCATTCAGGTT CTTCAAGTTCGTGTTCTAGCCCTAGAAATGCGGACGAGCGTTCTTGTTCTTCGGAATTAACGGATGAGTACGGATTGGACGATGAAGTAGACAAGAGGTT GAACCAATTGATACCAATCCGGCATGTTCCTAAAATCAACGGAGAAATGCCTTCACTTGATGAAGTAACCTCGGACCATGAAAGGCTTCTGAATAGATTA CACGCATTTGGTTTTGTTGAGGTTAAGGTTCCAGGAGATGGAAATTGTCAGTTTCGAGCATTATCAGATCAGTTATATGGAACTTCAGATCGCCACAAAA CTGTTAGAAGAGAGATTGTAAAGCAGCTAAAATCTAACCCGGAGATGTATGAAGGATATGTTCCAATGACATATCGTGAATATTTGAAGAACATGTCCAG ATCAGGTGAATGGGGTGATCATGTCACTTTGCAGGCAGCTTCTGATTCTTATGGCGTGAGAATACTCGTCATGACTTCATTCAAAGATACTTACTACATT GAGATTCTTCCGCTAAAGCAGAAGCCAAAAGGAGTGATCTTCTTGAGTTTCTGGGCAGAGGTACATTACAACTCAATCTACTTTCAGGAAGTAGCCTCCC CGGAACAGAATAAGAAAAAGAAAAGAAGGTGGCTATTTGGCAAGAAACACTAA
AA sequence Show only first row Show all	>Lus10023019 pacid=23146123 polypeptide=Lus10023019 locus=Lus10023019.g ID=Lus10023019.BGIv1.0 annot-version=v1.0 MAAYDHDPDVYQWGLSLLEPNPPYYPGYYGGGDVIQNDYTSSAPPPHHHPGHYVADFYITDNTHVENDEIIARTLQDDFSQLAVTESSNYSHQEGAEDQE HHRSAYYGGGSEWPTTSTSYNSSGEESSDDHSGSSSSCSSPRNADERSCSSELTDEYGLDDEVDKRLNQLIPIRHVPKINGEMPSLDEVTSDHERLLNRL HAFGFVEVKVPGDGNCQFRALSDQLYGTSDRHKTVRREIVKQLKSNPEMYEGYVPMTYREYLKNMSRSGEWGDHVTLQAASDSYGVRILVMTSFKDTYYI EILPLKQKPKGVIFLSFWAEVHYNSIYFQEVASPEQNKKKKRRWLFGKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03330			Cysteine proteinases superfami...		Lus10023019 [exp]	0	1
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	1.4	0.8212
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10029988 [exp]	4.9	0.7912
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	5.0	0.7842
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	5.1	0.8129
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	8.1	0.7842
AT1G08800			Protein of unknown function, D...		Lus10024869 [exp]	9.0	0.7412
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	9.6	0.7986
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	10.6	0.7587
AT3G19340			Protein of unknown function (D...		Lus10041510 [exp]	11.2	0.6826
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	11.7	0.7490

Compare expression of checked genes

Lus10023019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.