Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37010 1272 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT5G60740 1148 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT1G53390 1075 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31770 186 / 2e-49 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G25620 177 / 2e-47 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 177 / 5e-46 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT5G06530 177 / 5e-46 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G51500 172 / 1e-44 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT4G27420 171 / 3e-44 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G71960 169 / 2e-43 ATABCG25, ABCG25 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023199 [exp] 1345 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10016115 [exp] 1161 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10041325 [exp] 1129 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1052 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10038714 [exp] 750 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037981 [exp] 744 / 0 AT1G53390 1330 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033315 [exp] 187 / 3e-51 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 188 / 7e-50 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 186 / 8e-50 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126100 [exp] 1348 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.003G169000 [exp] 1195 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.010G225200 [exp] 1172 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G058900 [exp] 1167 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.004G236500 [exp] 194 / 8e-52 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 193 / 1e-51 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.019G083000 [exp] 180 / 4e-47 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 177 / 3e-46 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.009G051300 [exp] 176 / 1e-45 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.001G255800 [exp] 176 / 1e-45 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023020 pacid=23146147 polypeptide=Lus10023020 locus=Lus10023020.g ID=Lus10023020.BGIv1.0 annot-version=v1.0 ATGATCAGAGTACTATGTTGCTCATTGTTGTTTCTTATTCTTCCTAAATCCGGAGTTTCGTTAGACGAAGATGACTACAGCCGAACAGGAAACTCTGCAT TGCTTCCTGCCACTACCCAAATGATTTATCGCCGCCTCTCCAATCTCTCGGCAGTTTTCAAAGACGACATTCAAAAGAATCTGGGATTTTGTGTGACCAA TGTGAAAAAAGATTGGAATGGCGCTTTCAATTATGAAGGCCACTTAGAATTCCTGACAAATTGCATCAGGAAAACCAAAGGAGATGTGGGGCATCGATTA TGTACAGCGGCGGAAATCGAACTCTATTTCAGCGATTTTTTCCAGAAACTGAGTGCGGGTGGGCATCATGTTGGGCCTAACAAGAACTGCAATTTGTCAT CTTGGACCGCTGGGTGCGAACCAGGATGGGCTTGCAGTTCGGGAGCTGGCCCAAAACCCGATTTAAGAACAACTACTAATATTCCTTCTAGGACTAAAGA TTGTGAGCCCTGCTGTGAAGGATTCTTCTGTCCACGAGGTCTCACTTGCATGATGCCTTGCCCCTTAGGTTCTTATTGTCAAATGGCAACACTGAACAGA ACAACTGGAGTATGTGACCCATATGGATACCAAATACCACCTGGAAAAACAAACCATACATGTGGAAGTGCAGATTCATGGGTTGCTGTGGAAGATGGGG AAGAGGTTTTCTGTTCACCTGGCTCTTATTGTCCAACCACCACCATCACCATTCCTTGCAGTAGTGGTCACTATTGTCGAATGGGATCAACCACTCAAAC ATCTTGCTTTGAGTTGACGAGCTGTCCTCAGGGAACAGCAAATCAGAATCTTCATGCTTATGGCATCATTCTTATTGTAATGTTGACTACAACGCTACTG ATAATCGTCAACTGTTCGGACCAAGCACTGTCGACAAGGGAGAGAAGAGCCGCAAAAAGGAGAGAAGATGCGGCAAAACATGCCAAAGAAACAGCACAGG CACGGCAGAGGTGGAAAGCAGCACAAGACCTTACCGAGGTCCGTCAGCTTGGGTCCTTACAATCTCAACTTTCCACTACTCTGTCTCGAAACAAGTCCAT CAAACAACAACAACAACCTCAAACTGATAACAATACTAAAAAGGGGAAGAAAAACGACCTCACCAAGATGGTACAGTCAATCGATGAAGATCCCAACACC CATGATGGCTTCCACGTGGAAATTGGTGACAAGAACATTAAAAAACAAGCTCCCAAGGGGAAAAACCTCCACACTCATAGCCAAATATTCAAGTATGCAT ACGGCGAGCTTGAGAAGGAGAAAGAAGCCATGGAGCAAGACCATAGTAACCTCACATTTTCAGGCATTATTTCTATGGCTGCTGAGACTGATGTTAGGAG TAGGCCTGTCATTGAGGTTGCTTTCAAGGATTTGACTCTGACTTTAAAGGGTAAAAAAAAACATTTGCTGAGGTGTGTTAGTGGCAAGTTAATGCCTGGT AGAGTTTCTGCTGTTATGGGGCCTTCTGGTGCTGGAAAGACCACTTTTCTGTCTGCTCTACTTGGGAAGACAACTGGTTGTACGAGGACTGGTTCTATTC TTGTCAATGGCAAGAATGACTCTATCCTTTGTTACAAGAAGATAGTTGGCTTTGTACCTCAGGATGATATTGTCCATGGAAATTTGACCGTGGAAGAGAA TCTCCGGTTCAACGCCAGATGCAGATTAGCAGCAAACATGTCAAAGGCAGATAAAGTACTAGTGATCGAAAGAGTGATCGAGTCATTAGGACTGCAGGCG GTGGGAGACTCATTGGTCGGAACAGTGGAGAAGCGAGGAATATCCGGAGGACAAAGGAAACGTGTGAATGTAGGAATAGAAATGGTGATGGAGCCTTCAC TTTTGATTCTTGATGAGCCTACAACTGGCTTGGATAGCTCTTCTTCACAGTTGCTTCTTAAGGCCTTACGTCGTGAGGCTCTCGAGGGTGTTAACATCTG CATGGTTCTTCACCAGCCAAGCTTCGCAATGTTCAAAATGTTTGACGATTTCATACTGTTGGCAAAAGGAGGGCTTACTGTGTACCATGGACCAACAAAG AAAGTGGAAGAGTACTTTTCCAACATAGGAATCACAGTGCCAGAAAGAGTGACCCCTCCAGATCATTACATTGACATTTTGGAAGGCATAACCAAACCTA GTAACAACATAACTCATGAGGAACTCCCAGTGAGATGGATGCTGCATAATGGATACACAGTCCCTCCTGATATGTTACACATTTGTGATTCAATGAATAA GGACAATGCTACTTCGAAAGTCGACCTTGGCAACGAAACTAGTAGTGATGATAAGGATATCCCACATCGTGCGGAAGAACAACACAACTCTTTCTTTGGG GAATTATTCCAGGATGTACGCTGTCTTTTGGAGACACAATTAGATCAACTTCATCTTAACTTTCTTAGGTCTAAGGATTTATCCAGTAGAACAACTCCTA CTATACTCAGGCAGTACAGATATTACCTTGGAAGGGTTACCAAACAAAGACTAAGAGAAGCTAGACTACAAGCAGCTGATCTATTAATTCTGTTACTTGC TGGAGCTTGCTTAGGAACTCTTGCCAAAGTGGATGATGCTACATTTGGATCAACTGGATATACTTACACTGTCATTGCTGTTTCATTGCTAAGCATGATA TCAGCATTAAGATCTTTCACTCTAGACAAGCTGCATTACATGAGAGAAAGTGCATGTGGAATCAGTAGTCTAGCTTATTTCATGTCCAAAGATACGCTGG ACCTCTTCAACACCATCGTCAAACCTTTGGTCTACTTGTCTATGTTCTACTTCTTCAATAGCCCTAGATCAACCTTTCAAGACAACTATGTCGTCTTGCT TTCTCTGGTTTATTGTGTCACTGGATTGGCTTACATCTTTGCCATCTATCTTGGACCCAGTCCAGCACAGCTGTGTTCAGTTCTTGTTCCTGTCGTCTTG ACACTCGTTGCAACACAAGAGCATCAAACTGGATTGGTGAAGCGACTAGGACCACTATGCTTCCCAAAGTGGGCTATGGAGGCTTTCAGTATAGCAAATG CTGAAAGATACTCTGGTGTGTGGCTACTAACTCGATGCGCATCATTAAAACGAAGCAACTATGATTTGGGTCACTGGAGTTTGTCTTTGTCACTTCTCCT TCTCACAGGGATAATCACTCGCTTTATAGCCTACTTTTTACTGATTACATTCCAGAAGAAATGA
AA sequence Show only first row Show all	>Lus10023020 pacid=23146147 polypeptide=Lus10023020 locus=Lus10023020.g ID=Lus10023020.BGIv1.0 annot-version=v1.0 MIRVLCCSLLFLILPKSGVSLDEDDYSRTGNSALLPATTQMIYRRLSNLSAVFKDDIQKNLGFCVTNVKKDWNGAFNYEGHLEFLTNCIRKTKGDVGHRL CTAAEIELYFSDFFQKLSAGGHHVGPNKNCNLSSWTAGCEPGWACSSGAGPKPDLRTTTNIPSRTKDCEPCCEGFFCPRGLTCMMPCPLGSYCQMATLNR TTGVCDPYGYQIPPGKTNHTCGSADSWVAVEDGEEVFCSPGSYCPTTTITIPCSSGHYCRMGSTTQTSCFELTSCPQGTANQNLHAYGIILIVMLTTTLL IIVNCSDQALSTRERRAAKRREDAAKHAKETAQARQRWKAAQDLTEVRQLGSLQSQLSTTLSRNKSIKQQQQPQTDNNTKKGKKNDLTKMVQSIDEDPNT HDGFHVEIGDKNIKKQAPKGKNLHTHSQIFKYAYGELEKEKEAMEQDHSNLTFSGIISMAAETDVRSRPVIEVAFKDLTLTLKGKKKHLLRCVSGKLMPG RVSAVMGPSGAGKTTFLSALLGKTTGCTRTGSILVNGKNDSILCYKKIVGFVPQDDIVHGNLTVEENLRFNARCRLAANMSKADKVLVIERVIESLGLQA VGDSLVGTVEKRGISGGQRKRVNVGIEMVMEPSLLILDEPTTGLDSSSSQLLLKALRREALEGVNICMVLHQPSFAMFKMFDDFILLAKGGLTVYHGPTK KVEEYFSNIGITVPERVTPPDHYIDILEGITKPSNNITHEELPVRWMLHNGYTVPPDMLHICDSMNKDNATSKVDLGNETSSDDKDIPHRAEEQHNSFFG ELFQDVRCLLETQLDQLHLNFLRSKDLSSRTTPTILRQYRYYLGRVTKQRLREARLQAADLLILLLAGACLGTLAKVDDATFGSTGYTYTVIAVSLLSMI SALRSFTLDKLHYMRESACGISSLAYFMSKDTLDLFNTIVKPLVYLSMFYFFNSPRSTFQDNYVVLLSLVYCVTGLAYIFAIYLGPSPAQLCSVLVPVVL TLVATQEHQTGLVKRLGPLCFPKWAMEAFSIANAERYSGVWLLTRCASLKRSNYDLGHWSLSLSLLLLTGIITRFIAYFLLITFQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023020 [exp]	0	1
					Lus10022511 [exp]	3.9	0.8872
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	5.5	0.8872
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	6.7	0.8872
					Lus10005843 [exp]	7.7	0.8872
					Lus10010827 [exp]	8.7	0.8872
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	9.5	0.8872
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	10.2	0.8872
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	11.0	0.8872
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	12.0	0.8803
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	12.2	0.8771

Compare expression of checked genes

Lus10023020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.