Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03300 546 / 0 ADK2 adenosine kinase 2 (.1) AT3G09820 543 / 0 ADK1, ATADK1 adenosine kinase 1 (.1.2) AT4G27600 57 / 5e-09 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023197 [exp] 660 / 0 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10023532 [exp] 543 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 540 / 0 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10009220 [exp] 470 / 8e-164 AT5G03300 501 / 7e-176 adenosine kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G038100 [exp] 568 / 0 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.010G224300 [exp] 559 / 0 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.013G078600 [exp] 44 / 0.0001 AT4G27600 588 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10023021 pacid=23146172 polypeptide=Lus10023021 locus=Lus10023021.g ID=Lus10023021.BGIv1.0 annot-version=v1.0 ATGGGTGTCTCCGAGGGGATCCTCCTTGGGATGGGCAATCCATTGCTGGATATAACTGCAGTCGTGGACCAAGATTTCTTGAAAAAATATGGCATCGAGT TGAACAATGCGATTCTTGCGGAGGATAAGCATCTGCCGATGTACGAAGAAATGCCCAAAATGTACAAAGTGGAGTACATTGCAGGAGGTGCGACTCAAAA TTCAATCAAGGTTGCTCAGTGGATGCTTCAGTCCCCTGGCGCGACAAGTTATATTGGGTGTATTGGGAAAGACAAGTTTGGTGAAGAAATGCAGAAGAAC TGCAAGCTTGCTGGTGTTAATGTTCGATATTATGAAGAGGAATCTACGCCAACTGGAACTTGTGCTGTTTGTATACTAGGCGGGGAAAGGTCACTGGTTG CTAACTTGTCAGCAGCAAACTGCTACAAATCTAACCATCTTAGGAAACAAGCCAATTGGGCATTGGTTGAGAAGGCCAAGTACTTCTATATTGCAGGATT CTTCCTTACAGTGTCCCCAGACTCCATCCATCTTGTTGCTGAATATGCAGCCGCAACCAACAAGGTCTTTACCATGAACCTTTCAGCTCCATTCATCTGC GAGTTCTTCAGAGATGCCCTGGAAAAACTCCTCCCGTATATGGACTATGTATTTGGTAATGAGACTGAAGCAAAAAGCTTCTCTAAAGTCCATGGCTGGG AGACAAAGAACGTTGAGGAGATAGCTATTAAGATATCACAATGGACGAAAGCATCAGGAACATATAAGAGGATTACTGTAATCACCCGAGGTGCTGACCC TGTGATTGTTGCTGAGGATGGCAAGGTCAGGACTTTCCCTGTGATCCAGTTGCCAAAGGAGAAACTAGTCGACACAACGGAGCAGTTGGTCCAGAAGAAA CCCATTGAGGAATGTGTGAGAGCTGGCTGCTATGCTTCCAATGTTGTGATCCAAAGGTCTGGATGTACATATCCGGAGAAGCCAGACTTCAAGTGA
AA sequence Show only first row Show all	>Lus10023021 pacid=23146172 polypeptide=Lus10023021 locus=Lus10023021.g ID=Lus10023021.BGIv1.0 annot-version=v1.0 MGVSEGILLGMGNPLLDITAVVDQDFLKKYGIELNNAILAEDKHLPMYEEMPKMYKVEYIAGGATQNSIKVAQWMLQSPGATSYIGCIGKDKFGEEMQKN CKLAGVNVRYYEEESTPTGTCAVCILGGERSLVANLSAANCYKSNHLRKQANWALVEKAKYFYIAGFFLTVSPDSIHLVAEYAAATNKVFTMNLSAPFIC EFFRDALEKLLPYMDYVFGNETEAKSFSKVHGWETKNVEEIAIKISQWTKASGTYKRITVITRGADPVIVAEDGKVRTFPVIQLPKEKLVDTTEQLVQKK PIEECVRAGCYASNVVIQRSGCTYPEKPDFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	0	1
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	3.2	0.9090
					Lus10031873 [exp]	6.8	0.9020
AT2G39530			Uncharacterised protein family...		Lus10031303 [exp]	8.5	0.8950
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	11.0	0.8689
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	11.2	0.8879
					Lus10039025 [exp]	11.3	0.8916
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	12.2	0.8460
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	12.4	0.8702
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	14.7	0.8511
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10037247 [exp]	14.7	0.8257

Compare expression of checked genes

Lus10023021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.