Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52820 372 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 317 / 1e-107 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G28030 280 / 4e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52790 261 / 3e-86 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52810 255 / 6e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G52800 238 / 7e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80320 199 / 2e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15540 168 / 9e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03050 149 / 1e-42 AOP3 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G23340 119 / 5e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016659 [exp] 382 / 1e-133 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005516 [exp] 248 / 3e-80 AT1G52820 278 / 7e-92 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023160 [exp] 241 / 3e-79 AT1G52820 244 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006575 [exp] 212 / 1e-67 AT1G52820 221 / 1e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008097 [exp] 206 / 3e-64 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013132 [exp] 198 / 2e-61 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10013130 [exp] 191 / 8e-59 AT1G52820 200 / 3e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021025 [exp] 184 / 1e-55 AT1G52800 226 / 2e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10041281 [exp] 179 / 7e-55 AT1G52790 298 / 5e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176200 [exp] 399 / 4e-140 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175800 [exp] 313 / 2e-106 AT1G52820 338 / 2e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G175900 [exp] 307 / 7e-104 AT1G52820 328 / 2e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176500 [exp] 281 / 5e-94 AT1G52800 338 / 1e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176000 [exp] 268 / 6e-89 AT1G52790 460 / 2e-164 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G033400 [exp] 245 / 9e-80 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G248000 [exp] 245 / 6e-79 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176100 [exp] 215 / 4e-68 AT1G52800 286 / 5e-96 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G106900 [exp] 136 / 2e-37 AT4G23340 392 / 1e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G159500 [exp] 130 / 3e-35 AT4G23340 402 / 3e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023024 pacid=23146145 polypeptide=Lus10023024 locus=Lus10023024.g ID=Lus10023024.BGIv1.0 annot-version=v1.0 ATGGGTACTTCGAATTCTTTAAGGATTCCATTTATAGATTTCTCAAAGGCGGCTGCAGGAGTCGAACCAGGGAGCGATGAGTGGGAAAAGTTGAAACTGG AAGTTGGTGAAGCCGTGGAAGAGTATGGATGCTTCGAAGCATCGTTCGACAACAACATTTCGGTTGATTGTCGGAGGGCAGTTTTCAGATCAGTGAAAGA GCTCTTCAACTTGCCTTTAGAGACTAAGCTGCTGAATACTTCTGACAGGCCCTTGCACGGCTATGTTGGCCAATATCCTTCTCTTCCATTGTATGAGAGC ATGGGTATCGCCGATGCTGATGTCCTTGCAAATGTTGAAAGCTTGGCCAACTCACTTTGGCCCCACGGAAATCCATCTTTCAGCGAAACCGTGCAATCAT ATGCAGAGAAGATGTCAGAAGTTGAAAAAATGGTGAGGAGGATGATAATTGAGAGGTATGGACTTGAAAAGTACGTGGATGAACATCTCAACTCCACAAT TCTGCTATTGAGGATGATGAAATACAAACCACCACAGAGGCTTGAAGCAGTAGAACAAGGAATGCATCCTCATACTGACAAAGACATGATAACTATTCTA TGTCAAAACCAAGTGGATGGATTGGAAATACAAACCAAATCGGGCAAGGACTGGATTAATTTCAAACCCTCCACATCCTCCTCCTTTGTTGTTATGGTTG GTCAGTCTCTTTATGCTTGGTTGAATGGACGGGTTCATCCACCAGTGCATCGGGTTTTGATGTCAAGTAGTGAGACGAGATACTCGGTGGGTTTGTTTGT AGTACCTAAAGATGGATATATAATCAAAGCCCCTGAAGAACTGGTTGATGAAACACATCCTCTGCTCTTCAAGCCCTATGATTTTGTGGAGTTCTTCAAG TTTTATGACACTGAAGCTGGCCAGAACTCCCCTGATGCTTTGCGCGAGTTTTGTGGACTACTTTGA
AA sequence Show only first row Show all	>Lus10023024 pacid=23146145 polypeptide=Lus10023024 locus=Lus10023024.g ID=Lus10023024.BGIv1.0 annot-version=v1.0 MGTSNSLRIPFIDFSKAAAGVEPGSDEWEKLKLEVGEAVEEYGCFEASFDNNISVDCRRAVFRSVKELFNLPLETKLLNTSDRPLHGYVGQYPSLPLYES MGIADADVLANVESLANSLWPHGNPSFSETVQSYAEKMSEVEKMVRRMIIERYGLEKYVDEHLNSTILLLRMMKYKPPQRLEAVEQGMHPHTDKDMITIL CQNQVDGLEIQTKSGKDWINFKPSTSSSFVVMVGQSLYAWLNGRVHPPVHRVLMSSSETRYSVGLFVVPKDGYIIKAPEELVDETHPLLFKPYDFVEFFK FYDTEAGQNSPDALREFCGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	8.0	0.9366
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	13.3	0.9251
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10025741 [exp]	16.2	0.9079
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Lus10038332 [exp]	16.9	0.8854
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	18.2	0.9216
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	22.2	0.9201
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	22.5	0.9167
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	23.5	0.9135
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	24.2	0.9132
AT4G06534			unknown protein		Lus10024806 [exp]	25.3	0.9093

Compare expression of checked genes

Lus10023024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.