Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42850 150 / 7e-48 Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037477 [exp] 225 / 2e-77 AT5G42850 160 / 9e-52 Thioredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225500 [exp] 197 / 3e-66 AT5G42850 171 / 4e-56 Thioredoxin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF06110 [flax] [poplar] DUF953 Eukaryotic protein of unknown function (DUF953)
Representative CDS sequence Show only first row Show all	>Lus10023026 pacid=23170385 polypeptide=Lus10023026 locus=Lus10023026.g ID=Lus10023026.BGIv1.0 annot-version=v1.0 ATGACTGTCAAAATTGTGGACGCGACGGTTGCGAGCTTCAACGAGGTGTTCGAGAAGTTCAAATCAGAGTCGCCGAAATTCAAATCCAACCTCATCCTCT TCCTCGCCGACAACGATCCTGCCACCAATATCAGCTGGTGCCCCGATTGCGTGAGGGCGGAGCCGGTGATAAAGAAGAAGCTGGAAGCTTCCGGCGATGA CGTGGCGCTCCTTCGAGCTTACGTTGGGGACAGACCCACTTGGAGGAACCCACACCATCCTTTGAGGGTGGACTCGAAGTTCAAGCTGACTGGTGTCCCG ACTCTGATCCGCTGGGAGGATGATGCTGTTAAAGGAAAGCTTGAGGATCATGAAGCTCACCTTGAACGCAAAATCGATGCACTTCTATCTGCTACCAAGT AA
AA sequence Show only first row Show all	>Lus10023026 pacid=23170385 polypeptide=Lus10023026 locus=Lus10023026.g ID=Lus10023026.BGIv1.0 annot-version=v1.0 MTVKIVDATVASFNEVFEKFKSESPKFKSNLILFLADNDPATNISWCPDCVRAEPVIKKKLEASGDDVALLRAYVGDRPTWRNPHHPLRVDSKFKLTGVP TLIRWEDDAVKGKLEDHEAHLERKIDALLSATK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42850			Thioredoxin superfamily protei...		Lus10023026 [exp]	0	1
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10042560 [exp]	4.6	0.7069
AT3G03550			RING/U-box superfamily protein...		Lus10009264 [exp]	6.3	0.6882
AT1G64700			unknown protein		Lus10001663 [exp]	11.6	0.7363
					Lus10031351 [exp]	15.0	0.7197
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	20.2	0.6527
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	20.3	0.7164
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	26.7	0.5734
AT5G45320			unknown protein		Lus10035675 [exp]	28.6	0.6607
AT5G36930			Disease resistance protein (TI...		Lus10026845 [exp]	30.9	0.7035
AT5G09310			unknown protein		Lus10041297 [exp]	32.4	0.6509

Compare expression of checked genes

Lus10023026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.