Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59550 323 / 5e-100 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G16270 152 / 5e-38 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT5G40840 103 / 2e-22 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 84 / 2e-16 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 67 / 5e-11 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037478 [exp] 1276 / 0 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10026862 [exp] 148 / 2e-36 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 129 / 2e-30 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10041587 [exp] 105 / 4e-23 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10022338 [exp] 102 / 3e-22 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10020233 [exp] 96 / 3e-20 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225600 [exp] 366 / 1e-115 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.010G178600 [exp] 155 / 6e-39 AT5G16270 417 / 2e-127 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.008G078500 [exp] 153 / 4e-38 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.017G067400 [exp] 115 / 3e-26 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04825 [flax] [poplar] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein CL0157 [flax] [poplar] Kleisin PF04824 [flax] [poplar] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Lus10023028 pacid=23170377 polypeptide=Lus10023028 locus=Lus10023028.g ID=Lus10023028.BGIv1.0 annot-version=v1.0 ATGTTTTACTCACAGACGTTTCTAGCTCGGAAGGGTCCACTAGGGACAGTATGGTGCGCCGCTCACTTGCAACACAGGCTCAAGAAATCTCATTACACTT CCACCGATATCAAATCCGTTGTTGCTTGTATAATGTTCCCAGAAGTTCCCATTGCACTAAGAATGTCAGGGCACCTTCTGCTCGGAGTTTCTCGGATATA TTCCAAGAAAGTTGATTATCTCTTGCACGACTGCAATGTACTGATGGTTGGCTTGAAGAAGGCATTGGTTGCCACAGATATCAATTTGGCTGAGAATGAT CGAGCTGCTGCGTTTGATTCAGTCACCTTGCCGCAAAGTTTTAACCTTGACGATGTTGAGATCAACTACGACTCCTTCTCCGATGGGTCTCCTGACAGAA ATCTCATGAATCGTGAAGAGATAACACTTGCAGATCAAATTCCTACTGGTGTAGACCCATTTGTCGCTGTCACTTTTGATGATGACTTGTCAGATGATGG TTCACCTTCACGGCAGGCTGATGATTTAGGAACTATACCAGGAATGGATGACACCTTTCCACCATTCACATCTGCCGATGACTTTGATGGAAATCATGAA AGTTTTGTTCCAAGCAATCAGACTGAAGTCTTGCATACTGAAACTGAAACACAGTTGCAAGACACTGGTCCACCCAATCAGACTGAAGCTGGCACAAGTG ATCATACCAATGTACATACTGAGATTAACGAGTCTGGACAAAGCAATGCGACCATAAATCTTGGTTCCAAGGATACTGACAACAACGATGACTCCTCTCC TGATTTCGGAATCTTGCGTGATGCTATCCATGATTCCAGTCCGGTAAGACTTCCTAATCTGTCTCCTATCCGAGAAATGGATGCTCCTGATGATACAAGC ATCCGTTCGGAGCAAGATTTGCTCGGTAAGGACATTACTACTAATCCTATCCCAAAAGAGCCTTCTTCGTTTCAACTTCCGCCACATTCAGAACCTCCGA ATTCTCCTCCTTCCGGAAGAGATCCACCGTTTTCCGTTTCAAATTCGCCACCTGGCGAGTCAACCCCCGGGCTTCATGTTGCAGCTTCGACACCACCTGT TCAGCAACCAGAGCCACCTGCTCAGCAACTTCGGCTGAGGGGAATAAAGAGAAAGTACTTCGATGAAGCCACAGTCTTGACTAACAAGTATATCAAGAAG CGCTTAGAAAATTGTACTGATTTGTTACGCAAAAAGAGGAATGCACCTTCTTCTTCTTTGGATGTCTGGAGGCAGAACAAGAGATTGAAGAAAGATCGAG TTTTCCACGAACCGTTAATAACTGGGATGTCCTCTGTTTTGAGTAGCTTCTTTGAGGAGGGCCATGATTTCGTAAAGCACAATGCGATTCTTCATGAGGA GGAAGATACAATGGAGACTCAAGGTCGAACATCTCCTGTTCGAGATGATGTCGTAACTCCTGAGAAAGTAGTAACTCCTTCTGCTCCTGTTGTCGGGACC GTCATTGAGCCAACAGATGGAAATCCTTCAGCTCGGGATGATATGGACATTGATTCAGCTGAAGTCATCCGGAATGCTGAAAGCCACCATCATGATAATG ATCGACCTGAGATTCCGGATTCACCTATCCAACATTCGCCTATCCATAGACGGGATGATGATGACTCAACACCTAGCCCCAGGAACTTTCAATCAACTAC AGAGACTCTTGCAACAGGGCACACTGCTGGAAGTGGAAATCAGCAGACAGTAGATGACTTTACCACCTCGATAGGGACGTACATTTCCGGATTGATGACT CCGAGGACGAATAATGATGATGATAATCCGTTTTTTGCGGAGGACACCCAGCTTTCTCATATACTTGAATTGAGGGAAAGCCCTGAAACGGAAGATCATT CTCCTGAAGCAGATAACACTCCAGCAGGATCCTCAAGGAAAAGCGGTAAAGGAGGTCATCAGTTGTCTGGTAGAACAAGGGCTGTAGCTCAGTATCTGGA AAGACAAACTCCAATCACTCTGAGAATGGACGACCCTTCTAAAGAAATCAGTCTCAACCAGATCTTACTAGGGAAACCAAGAAAGCTCTGTGCAAGAATG TTCTATGAAACTCTGGTTCTGAAGAGCCATGGAGTTGTTGAAGTGGAAAGGGAGGCGCCACAGGAAAGCATCCGTTTGAACTTTGATGTACAGCAAGACG AGCCGTACGGTGACATTCTTTTGAAGCTCCGTAGGTTATAA
AA sequence Show only first row Show all	>Lus10023028 pacid=23170377 polypeptide=Lus10023028 locus=Lus10023028.g ID=Lus10023028.BGIv1.0 annot-version=v1.0 MFYSQTFLARKGPLGTVWCAAHLQHRLKKSHYTSTDIKSVVACIMFPEVPIALRMSGHLLLGVSRIYSKKVDYLLHDCNVLMVGLKKALVATDINLAEND RAAAFDSVTLPQSFNLDDVEINYDSFSDGSPDRNLMNREEITLADQIPTGVDPFVAVTFDDDLSDDGSPSRQADDLGTIPGMDDTFPPFTSADDFDGNHE SFVPSNQTEVLHTETETQLQDTGPPNQTEAGTSDHTNVHTEINESGQSNATINLGSKDTDNNDDSSPDFGILRDAIHDSSPVRLPNLSPIREMDAPDDTS IRSEQDLLGKDITTNPIPKEPSSFQLPPHSEPPNSPPSGRDPPFSVSNSPPGESTPGLHVAASTPPVQQPEPPAQQLRLRGIKRKYFDEATVLTNKYIKK RLENCTDLLRKKRNAPSSSLDVWRQNKRLKKDRVFHEPLITGMSSVLSSFFEEGHDFVKHNAILHEEEDTMETQGRTSPVRDDVVTPEKVVTPSAPVVGT VIEPTDGNPSARDDMDIDSAEVIRNAESHHHDNDRPEIPDSPIQHSPIHRRDDDDSTPSPRNFQSTTETLATGHTAGSGNQQTVDDFTTSIGTYISGLMT PRTNNDDDNPFFAEDTQLSHILELRESPETEDHSPEADNTPAGSSRKSGKGGHQLSGRTRAVAQYLERQTPITLRMDDPSKEISLNQILLGKPRKLCARM FYETLVLKSHGVVEVEREAPQESIRLNFDVQQDEPYGDILLKLRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	0	1
AT1G09320			agenet domain-containing prote...		Lus10031429 [exp]	1.0	0.9623
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	2.8	0.9432
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	3.2	0.9580
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	9.0	0.9245
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	9.8	0.9276
AT4G02800			unknown protein		Lus10000658 [exp]	9.9	0.9469
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	15.7	0.9215
AT4G17000			unknown protein		Lus10035651 [exp]	16.6	0.9336
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	16.9	0.9238
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	18.6	0.9133

Compare expression of checked genes

Lus10023028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.