Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 316 / 6e-104 BTB/POZ domain-containing protein (.1.2) AT4G10800 246 / 5e-79 unknown protein AT1G63850 57 / 1e-08 BTB/POZ domain-containing protein (.1) AT3G50780 50 / 2e-06 unknown protein AT5G60050 47 / 3e-05 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033220 [exp] 758 / 0 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10021269 [exp] 258 / 3e-81 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10013580 [exp] 256 / 1e-80 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10022484 [exp] 57 / 2e-08 AT3G50780 602 / 0.0 unknown protein Lus10017511 [exp] 55 / 8e-08 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 54 / 2e-07 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 53 / 4e-07 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 49 / 4e-06 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 45 / 0.0001 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086100 [exp] 525 / 0 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.003G144700 [exp] 365 / 1e-125 AT4G10800 265 / 2e-88 unknown protein Potri.006G202900 [exp] 321 / 4e-106 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.003G131000 [exp] 61 / 8e-10 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 58 / 7e-09 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 53 / 3e-07 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 49 / 5e-06 AT3G50780 623 / 0.0 unknown protein Potri.016G069566 [exp] 45 / 5e-06 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2) Potri.004G154600 [exp] 48 / 1e-05 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 42 / 0.0005 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10023030 pacid=23170372 polypeptide=Lus10023030 locus=Lus10023030.g ID=Lus10023030.BGIv1.0 annot-version=v1.0 ATGGACGAACCCGGAACACCCAAGGAGGATTTCGTTCTGGGAGATCGGAGCACTAGTGACATTGTGATTCGATTGAAGAACTCAGAAGGAATCTCAGAAA CATTCCACTGCCATTCCTCCATTCTGGTAAACAAGAGCAAGTTTTTCGAAGATTGGATCTTGAATCACGAACCCGGTACGTGTGTAGAGATTCAATGCTC CGCTGCGAATTATGAACATCACGTTTCTCTTTTAACGTTGCTATACATCGAACCGGACTCGCTCTTGCATTCCTTCGAGGCTGTTAAATCCGCACTAGGA GTTCTCGAGGTATCGGTTGCTCTCGGCTGTGAAGAGATCACAAATAACTGCATCCAGTATTTGGAAGCTGTTCCTTGGGAGGAACAAGAAGAGGAAGAAA TTGTACAAGTATCTTCGAAACTCGGCCCTATAGCTATGCCTATAACAGCCAGAATAAAACCGGTCGATCTGAGCGCCACGAAGAGCGTTTTTCTCTCCGC CCTTCGCTTCGCTACATCTACCGGAGGGTCTTGTCCTCCTTTCGGTGGCGACGAACTCAGAACTTCTGCTCAAGAACAAGTGGAATACATGTTGGGAGAG GACGAAGATACCCCTCTAGTAAAAGCCGACAAAGAAGTGAAATCAGTTGTGAGATTAGGTCTTTCGCAGATCTTCTCTTCGTTACTGATGCAAATGTCTT CATTGCTGTCTGAATCTGACATCTCATTAGAAATAAAAGAGATCGACACGTTGCATATCGTGTCTGATCTCGCGTGGATGTGTAGTATACTTCCGAAGAT GGATCTCATGAAGGACTTTGTCGTGAAATGGACCGAAACATCTAACCGGGTTATTGAGATAATCGAGGACGAGAGGCTCGATTCGACGATGTGGGGTTTG AAACTGAAGTTGGTAGAAGTAACTGTTAAGGTATTGGAAGCTGTTGGCTATGGGAATGTGATCCTACCAGCACTGTCCCGGGGACAGTTGTTGAAGGCAT GGCTGCCTTACATCAGGAAACTGAAGCCTCTGTTAGACGCGAAAGGTGACCAAGACACGAGTTTTCCTTACGGGATGGACGAAGATCTGTGCCAAAACAT AGAAGGTGCGATCGTGTCGCTGATACTGGCATTGCCATCAAATGACCAGGCTGATATTCTTGCAGGCTGGATGCATTCAGACCAGGTTAAGTTCCCGGAC TTGAGCGAGGCTTTCGAGGTTTGGTGTTATAGAACCAAATCGGCTAGGCGAAGGTTGGTTGAAGGCATGGAAAGAGTTGGTAATGAAAACGTGAACGGTA ATGCCACCGTCACTCTCTGA
AA sequence Show only first row Show all	>Lus10023030 pacid=23170372 polypeptide=Lus10023030 locus=Lus10023030.g ID=Lus10023030.BGIv1.0 annot-version=v1.0 MDEPGTPKEDFVLGDRSTSDIVIRLKNSEGISETFHCHSSILVNKSKFFEDWILNHEPGTCVEIQCSAANYEHHVSLLTLLYIEPDSLLHSFEAVKSALG VLEVSVALGCEEITNNCIQYLEAVPWEEQEEEEIVQVSSKLGPIAMPITARIKPVDLSATKSVFLSALRFATSTGGSCPPFGGDELRTSAQEQVEYMLGE DEDTPLVKADKEVKSVVRLGLSQIFSSLLMQMSSLLSESDISLEIKEIDTLHIVSDLAWMCSILPKMDLMKDFVVKWTETSNRVIEIIEDERLDSTMWGL KLKLVEVTVKVLEAVGYGNVILPALSRGQLLKAWLPYIRKLKPLLDAKGDQDTSFPYGMDEDLCQNIEGAIVSLILALPSNDQADILAGWMHSDQVKFPD LSEAFEVWCYRTKSARRRLVEGMERVGNENVNGNATVTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05675			BTB/POZ domain-containing prot...		Lus10023030 [exp]	0	1
AT5G43150			unknown protein		Lus10041628 [exp]	11.5	0.6983
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	23.0	0.5965
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	89.8	0.5990
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10037063 [exp]	100.8	0.5555
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10017201 [exp]	170.6	0.5335
					Lus10019651 [exp]	216.9	0.4989

Compare expression of checked genes

Lus10023030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.