Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42000 270 / 2e-94 ORMDL family protein (.1.2) AT1G01230 253 / 1e-87 ORMDL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033219 [exp] 319 / 5e-114 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10005980 [exp] 258 / 9e-90 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 243 / 8e-77 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10003209 [exp] 212 / 3e-72 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 210 / 7e-71 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 83 / 2e-21 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144600 [exp] 282 / 2e-99 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 276 / 6e-97 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2) Potri.002G174400 [exp] 261 / 9e-91 AT1G01230 254 / 3e-88 ORMDL family protein (.1) Potri.014G101000 [exp] 259 / 4e-90 AT1G01230 285 / 3e-100 ORMDL family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [flax] [poplar] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Lus10023031 pacid=23170327 polypeptide=Lus10023031 locus=Lus10023031.g ID=Lus10023031.BGIv1.0 annot-version=v1.0 ATGTACGTGAGAGCAGATCCCTCGACGGATTTGAATCGGAACACCGAATGGTTCACCTATCCAGGCGTCTGGACTACTTACATCGGCATCCTTTTCGCCT CCTGGTTCATGGTTATCTGCCTCCTCGGCTGCTCCCCCGGCACCGCTTGGACCGTCGTCCATCTCGCCCACTTCATAATTACATACCACTTCTTTCACTG GAAGAAGGGAACTCCATTTGCTGACGACCAAGGTATCTACAATGGGTTGACATGGTGGGAGCAAATAGAGAACGGGAAGCAGCTAACACGTAATAGGAAG TTTCTCACTATTGTACCAGTTGTGCTATATCTGATAGCCTCACACACCACAAACTACCAAAATCCAATGCTGTTCTTCAACACAATGGCCGTATTCGTGC TGGTCGTCGCAAAGTTCCCTCACATGCACAAAGTTAGGATTTTCGGGATCAATGCCGACTTCTGA
AA sequence Show only first row Show all	>Lus10023031 pacid=23170327 polypeptide=Lus10023031 locus=Lus10023031.g ID=Lus10023031.BGIv1.0 annot-version=v1.0 MYVRADPSTDLNRNTEWFTYPGVWTTYIGILFASWFMVICLLGCSPGTAWTVVHLAHFIITYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRK FLTIVPVVLYLIASHTTNYQNPMLFFNTMAVFVLVVAKFPHMHKVRIFGINADF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	0	1
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	1.0	0.8620
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	3.2	0.8247
AT1G60870		MEE9	maternal effect embryo arrest ...		Lus10022977 [exp]	4.9	0.7718
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	4.9	0.8126
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	6.0	0.8051
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	6.2	0.7491
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	10.5	0.7728
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	12.0	0.7784
AT4G36960			RNA-binding (RRM/RBD/RNP motif...		Lus10009360 [exp]	12.0	0.7720
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	15.3	0.7914

Compare expression of checked genes

Lus10023031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.