Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24060 137 / 9e-38 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 137 / 2e-37 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 114 / 2e-29 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 115 / 3e-29 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 108 / 5e-27 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G60200 105 / 1e-26 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G00940 105 / 6e-26 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 103 / 2e-25 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT1G21340 101 / 6e-25 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 100 / 8e-25 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033218 [exp] 353 / 1e-121 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 139 / 1e-38 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 141 / 2e-38 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 133 / 4e-36 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 113 / 2e-28 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10042114 [exp] 103 / 3e-27 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 109 / 4e-27 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10029767 [exp] 105 / 4e-26 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10022373 [exp] 103 / 6e-26 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144500 [exp] 172 / 7e-52 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 166 / 2e-49 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 129 / 4e-35 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G174300 [exp] 124 / 2e-33 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.014G100900 [exp] 114 / 1e-29 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 112 / 9e-29 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.016G069300 [exp] 103 / 2e-25 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G188900 [exp] 103 / 2e-25 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.009G029500 [exp] 103 / 4e-25 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G081300 [exp] 102 / 5e-25 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10023032 pacid=23170338 polypeptide=Lus10023032 locus=Lus10023032.g ID=Lus10023032.BGIv1.0 annot-version=v1.0 ATGGATACAGCTCAGTGGCCTCAGGAGATAGTGGTGAAACCGATAGAAGAGATACTAACAACTCCTCAAAATCAGAAGCCTGGGGGAGGAGGAGGGAAAG TGAATAGCAGCAGTAGGAATAATAATAATGATGTTACAGATCAAAAGGAGCAGCAGAAGGCAATACTGAACTGTCCAAGGTGCAACTCAACCAACACCAA ATTCTGCTACTACAACAACTACAGCCTGACTCAGCCAAGGTACTACTGCAAGACATGTAAAAGGTACTGGACTGAAGGTGGATCTCTGAGGAACATCCCA GTTGGTGGTGGCTCCAGAAAGAACAAAAGACCTCATCCTCCTCCTAATCCTTCTGATCCATCATCCTCTTCAAACAATTACTCCAACCCTTCAAAGAAAC TCCCTGGTTTAGTCTCTTCCCCTGCCTCTACTCTGCCTCCTCCTCCTCTGAACCCTAAGATGATCCAAGATCAAGAAGGACAATTACATCATCAGGATCT TAACCTTGCCTTTCCTAGAAGCTTCACTGAGTTGATTAGTCATCACCATCATCATGAGAGCAACAAGAACAACAACAACAACCATGTTTCAGCTATGGAG CTACTGACAGGAATCTCATCCTCATCTTCTGGCCCAAGCTTCATGCATATGCCTCCATCAGGTCATGTTTATAACAATAATGCATCTCCTTTCCCAGGTG TGAATGTGATGCATGATGATCATCAGGAATTTGTGAAGCCTAGTGGGTTGAGTTTCTCTCTGGATGATATTGGGCTTGGGATCAGTACTAACAGCAATGG CAATAGTAATGGCAACAGCAGCAATAGGCCATTTTTCTCGTTTGAAGATCTGAAGCAAGTTCCTCCAACCAACAATCATCATCATCATGATCATAGTAAC GGTAAAGAAGATCAGCAGCAGCAGCAGCATGTTGCAGACTCAAATGGCTACTGGACTGGAATGCTAGGAGGAGGAGGAGGTGGATCATGGTAA
AA sequence Show only first row Show all	>Lus10023032 pacid=23170338 polypeptide=Lus10023032 locus=Lus10023032.g ID=Lus10023032.BGIv1.0 annot-version=v1.0 MDTAQWPQEIVVKPIEEILTTPQNQKPGGGGGKVNSSSRNNNNDVTDQKEQQKAILNCPRCNSTNTKFCYYNNYSLTQPRYYCKTCKRYWTEGGSLRNIP VGGGSRKNKRPHPPPNPSDPSSSSNNYSNPSKKLPGLVSSPASTLPPPPLNPKMIQDQEGQLHHQDLNLAFPRSFTELISHHHHHESNKNNNNNHVSAME LLTGISSSSSGPSFMHMPPSGHVYNNNASPFPGVNVMHDDHQEFVKPSGLSFSLDDIGLGISTNSNGNSNGNSSNRPFFSFEDLKQVPPTNNHHHHDHSN GKEDQQQQQHVADSNGYWTGMLGGGGGGSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10023032 [exp]	0	1
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	1.0	0.8953
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015710 [exp]	2.0	0.8734
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	2.8	0.8588
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10018692 [exp]	3.2	0.8555
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	4.2	0.8547
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	5.2	0.8495
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	7.1	0.8444
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	7.3	0.8647
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	7.5	0.8532
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	12.6	0.8318

Compare expression of checked genes

Lus10023032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.