Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24320 502 / 8e-169 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G42010 484 / 7e-162 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 478 / 5e-160 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G53500 461 / 2e-153 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54200 399 / 2e-127 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 376 / 4e-118 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 327 / 3e-99 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 305 / 2e-91 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 292 / 2e-89 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 71 / 7e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032436 [exp] 1442 / 0 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 825 / 0 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 805 / 0 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022377 [exp] 470 / 8e-157 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 326 / 4e-98 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 322 / 7e-97 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 310 / 6e-96 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 298 / 8e-92 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 287 / 3e-86 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086600 [exp] 874 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 865 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 642 / 0 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G009700 [exp] 598 / 0 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 570 / 0 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 409 / 6e-130 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G110500 [exp] 392 / 1e-126 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G403400 [exp] 399 / 8e-126 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 366 / 8e-117 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 331 / 1e-100 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023033 pacid=23170425 polypeptide=Lus10023033 locus=Lus10023033.g ID=Lus10023033.BGIv1.0 annot-version=v1.0 ATGGAGAGTTGCAGTGAGGATGAGCGATTCTTCGATACTCGAGAAGAAGAGGTATGTTCATCCTCTGGCTGGGCTTCAGATTCAGTTTCCCCTAATTGCC AGTTCGAGATTTGGACTAAGAATCTGGAAAGCGTCGAGGATCGGCGCCGGAAGTTCTTCAGATGGATGAATCTCAGTTCCGATCCAAATTCGTTGGAGGA ATTTGAAGCGGGGATTTCCGAGGAGAATAAGAAGATCCAATTAGGGTTTGATAGGGTTATGAATGATAGCGGCGCAGTGTTGAGAACTTCTGGTTCTGAA GAAGAAGGGTTCTGGTCTGACACTTTGTCTAGGTCTACTTCTTGTCAGTCAGCTGAAGCTCGGGAATCGTTTGACGATGGTGGTGATGAGGAGGTGGATT TCAAGTACAAAATCAGGAATTTGGATGACGGGAGAGAGTTTGTTCTCCAAGAGCTAGATCAAGATGGTAGGTTTAGTCGATTTCGCGAAGTGGGATCGAA TCGGTCTCTTAACTTTGAAGAGTTCCAGAGGAGTATTGGATGGTCACCTTTGATTCAGAGGCTTCTACGTAGGTATGCGGATGAGGCAAGGAACATGGTG GAGGTTAGGAAGAAACCTAAGAGGGGTTGGCTCAGTAGGTTTGGATCACCATCGAGAGTACTCGACAACAAGAGCGAGGTGAATGCTGTCGAACTATCTC GCCTAGGGTCGAAGAATATGCAAAGACTTAAAGTTCATTCCCACAAGAAGAAGACCAAACAGTTGTCTTCTCTCTATACTGGACAGGAGTTTCTGGCTCA TAAAGGGTCTATACTGACAATGAAATTCAGTCTTGATGGCCAATACTTAGCTAGTGGTGGAGATGATGGTATTGTGCGGGTTTGGAAGGTGATTGAGGAT GATAGATCGGACCAATTTGATGTCCCAACGACTGATCCGTCATGTCTGTACTTTGCAATAGACCATAAGTCGAATATAACTTCCGTGGGTGTTGATGCAA TCTCAAAGGACAGTGGCAAAACAAAGAGGCATATATCATCAGACTCAACTTGTGTTGTTTTGCCACCAAAAGTGTTCAGGGTTCTCGAGAAGCCTCTGCA TGAGTTCCAGGGACACAATGGCGAAGTTTTGGATCTCACCTGGTCTAAGCAGAGGTTGCTCCTGTCTTCTTCTGATGATAACACTGTACGCCTTTGGCAA GTGGGTCGCGAAAAATGCCTCAGGGTTTTCCATCATAACAACTATGTGACTTGTGTTCATTTCAATCCTGTGGACGAAGACTATTTCGTTAGTGGTTGTA TAGATGGAAAAGTCCGCATCTGGCAAGTGTCTGGCTGTCAGGTTGTTGATTATAAGGATATCGGAGAGATAGTCACTGCTGTAGCTTATCGTCCTTCTGG AGAGGTTGCCAAATCTTACTCTCAGGGAGCTCTTGTGGGAACCATGACTGGAAACTGCCTTTTCTACGAGATTATCGATAATAAAATGAGACAGGACTCT GAAATTTCCTTGCAAGGCAAAACAAAGTTGCCTGGCAAGAGGATAACTGGCTTTGAGTTCTCCCCAACTGATCCGAGTAAAGTAATTGTCACATCGGCTG ATTCTCTCGTGCGAGTTCTCTGCAGCACAGATGTTATATGCAAATTTAAAGTATCGGGCCTTCGGGTTGCTGCGAACCAGATGCATGCTACTTTTACCTC AGATGGGAAGCATGTTGTCTCTACGAGTGACGACTCAAATGTCCACGTATGGAACTACGATAAACAGGAAAAGCCATCTTCTCGAGCTAAGCATATCCAC TCCTACGAGAGTTTCATGTCCCGGAATGCTTCCGTGGCAATTCCTTGGCGTGGTATCGAAACTGTGCCAGCCACAATCCTATCTCCACCACCTCTGCCTG CTGGGGATGTGCATGCAACTAGCAGCAACGCTGGGAATAACCATCGCAATAGTACGGTAACTTCACCAGATTGTTTCTCTCTTACTCGTGGGTTTTTGTT GGATTCCTTGATCCGAGGATCTGCAACCTGGCCTGAGGAGAAACTCCCCAATTCGAAACCGGTTTCAGTGTCGACTCCGAAATTTAAATCCGAGTTCAAG TTTTTGAAGAATGCATGCCAGAGTATGTTCAACTCTCACATGTGGGGGTTGGTGATTGTTACTGCCGGCTGGGATGGACGAATCAGAACGTACCTCAATT ATGGGTTACCTCTTCGTGTCTGA
AA sequence Show only first row Show all	>Lus10023033 pacid=23170425 polypeptide=Lus10023033 locus=Lus10023033.g ID=Lus10023033.BGIv1.0 annot-version=v1.0 MESCSEDERFFDTREEEVCSSSGWASDSVSPNCQFEIWTKNLESVEDRRRKFFRWMNLSSDPNSLEEFEAGISEENKKIQLGFDRVMNDSGAVLRTSGSE EEGFWSDTLSRSTSCQSAEARESFDDGGDEEVDFKYKIRNLDDGREFVLQELDQDGRFSRFREVGSNRSLNFEEFQRSIGWSPLIQRLLRRYADEARNMV EVRKKPKRGWLSRFGSPSRVLDNKSEVNAVELSRLGSKNMQRLKVHSHKKKTKQLSSLYTGQEFLAHKGSILTMKFSLDGQYLASGGDDGIVRVWKVIED DRSDQFDVPTTDPSCLYFAIDHKSNITSVGVDAISKDSGKTKRHISSDSTCVVLPPKVFRVLEKPLHEFQGHNGEVLDLTWSKQRLLLSSSDDNTVRLWQ VGREKCLRVFHHNNYVTCVHFNPVDEDYFVSGCIDGKVRIWQVSGCQVVDYKDIGEIVTAVAYRPSGEVAKSYSQGALVGTMTGNCLFYEIIDNKMRQDS EISLQGKTKLPGKRITGFEFSPTDPSKVIVTSADSLVRVLCSTDVICKFKVSGLRVAANQMHATFTSDGKHVVSTSDDSNVHVWNYDKQEKPSSRAKHIH SYESFMSRNASVAIPWRGIETVPATILSPPPLPAGDVHATSSNAGNNHRNSTVTSPDCFSLTRGFLLDSLIRGSATWPEEKLPNSKPVSVSTPKFKSEFK FLKNACQSMFNSHMWGLVIVTAGWDGRIRTYLNYGLPLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	0	1
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10037216 [exp]	3.0	0.8151
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	7.9	0.8137
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	10.2	0.7689
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10029517 [exp]	10.7	0.6901
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	12.0	0.7731
AT3G63380			ATPase E1-E2 type family prote...		Lus10004086 [exp]	13.4	0.7195
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	17.1	0.7287
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	21.1	0.7483
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	28.9	0.6871
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	29.3	0.6396

Compare expression of checked genes

Lus10023033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.