Plant FIBer expression Database

Lus10023034 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24040 654 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032435
[exp]
1095 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1)
Lus10023035
[exp]
817 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1)
Lus10032434
[exp]
649 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G144000
[exp]
806 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1)
Potri.001G087100
[exp]
801 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1)
Potri.003G143900
[exp]
775 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1)
Potri.006G068300
[exp]
218 / 2e-68 AT4G24040 156 / 9e-46 trehalase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0059 6_Hairpin PF01204 Trehalase Trehalase
Representative CDS sequence
>Lus10023034 pacid=23170358 polypeptide=Lus10023034 locus=Lus10023034.g ID=Lus10023034.BGIv1.0 annot-version=v1.0
ATGGACAACAACCATCTCCTTACCTTCTACTTCTTCCTACTGCTCCTCCCTTCAATCTTCTCCCACCCCATTTCCGCCGCCACATGCGGCGGCGCTGGCG
GCGATCAGGGTCCTGTAGTACCCACTCCACCTCTGCTTTCATTTCTGGTACGGCTGCAAGAAACGGCGCTGCAGACGCTCGGCGGAGGGAACAATTTCGA
CCCAAAATTCTACGTCGACGTGTCGCTCAAGTTCAACCTCTCTACCACCCAGAAGGTGTTCGACGGTTTGCCCAGGAGAAAGGATGGGAAAGTTCCGGCT
CGGGCGTTCCAGAGGTTTGTGACTGAGTACTTGGAGAGTGCTGGAGATGGTCTAGTGGTACATCTGCCGGTGGATTTTGTGGCGGAGCCTGAAGGGTTCT
TGCCCAAGGTGAAGAACCCGAAAGTCAGGGCTTGGGCGCTGGAAGTTCATTCCTTGTGGAAGAATTTGAGTAGGAAGGTGTCTGATGAGGTCAGGGAATC
CCCTGACTTACACACTTTGCTTCCCTTGCCAGGTCCCGTTGTGATTCCTGGGTCACGTTTCAGGGAGGTTTATTATTGGGATTCTTACTGGGTCATCAGG
GGCCTGATGGCAAGCAAAATGTACGAAACTGCGAAATCGATAGTGACTAATCTGATATACCTCTTGGATACATATGGACATGTCCTGAATGGTGCGAGGT
CTTATTACACTAACAGAAGTCAGCCTCCACTTCTCAGTGCAATGGTGTATGAGATATATAACAGGACAGGGGACGTGAAATTCGCCATGAAGGCACTGCC
TGCCCTGATCAAAGAGCATGAATTTTGGACTTCTGGTCAACACAACATTACTGTCCATGATGGAAAAGCTGCCAAACACAGCTTGAGCCGGTATTATGCA
ATGTGGAATACACCTAGGCCTGAATCCGCAACTATTGACAGGGACTCTGCTGCCAACATCTCAAATGCTTGCGAGAAGCAGAAGTTTTACAGAGAAGTAG
CATCAACTGCTGAGTCAGGTTGGGATTTCAGTACAAGATGGATGAGGAATACATCTGATTTCACAACACTGTCAACAACATCCATTTTACCTGTTGATTT
GAACACTTACTTGCTAAAGCTGGAACTTGACATTTCAATGTTGGCCAAAGTTACGGGAAAGTCGACAATTGCTAGACGCTTTTCCAAAGCCTCTGAAGCA
AGAATACAAGCTTTGAAGTCAGTTTTTTGGAATGCTGAGAAAGGGCAGTGGTTCGATTACTGGCTTAATCACGGATCCTCTCTCGAGGGTTTTAGCTCTT
ATTCGTGGAAAGGCTCCAACCAAAATCAGAATGCATTTGCCTCTAACTTCGTCCCCTTGTGGATTGATCAGTTCCATTCAGACGAAGTTTTGGTGGAGCA
AGTGTTGAAAAGTTTCCAAAAGTCAGGCCTTATTCGTGCCACTGGAATCGCTACATCGCTGACAAACTCAGGACAACAATGGGACTTTCCAAATGGATGG
GCGCCACTACAGCACCTGATCGTGGAAGGCCTAGCTCGATCCGGGTCGAAGAAGGCGAAATCTTTGGCAGAAGATATAGCAGTGAGATGGATAAACAGTA
ACTATATCGTTTACAACAAAACCGGGTCAATGCATGAGAAGCTTGACGTGCAAGCTTGTGGGGAGTTTGGCGGCGGTGGTGAGTACGTTCCTCAGACTGG
TTTTGGGTGGACAAATGGAGTGGTATTGGCATTTCTGGAGGAGTTTGGGTGGCCTCATGACAGAGAGCTCGGCTGCTGA
AA sequence
>Lus10023034 pacid=23170358 polypeptide=Lus10023034 locus=Lus10023034.g ID=Lus10023034.BGIv1.0 annot-version=v1.0
MDNNHLLTFYFFLLLLPSIFSHPISAATCGGAGGDQGPVVPTPPLLSFLVRLQETALQTLGGGNNFDPKFYVDVSLKFNLSTTQKVFDGLPRRKDGKVPA
RAFQRFVTEYLESAGDGLVVHLPVDFVAEPEGFLPKVKNPKVRAWALEVHSLWKNLSRKVSDEVRESPDLHTLLPLPGPVVIPGSRFREVYYWDSYWVIR
GLMASKMYETAKSIVTNLIYLLDTYGHVLNGARSYYTNRSQPPLLSAMVYEIYNRTGDVKFAMKALPALIKEHEFWTSGQHNITVHDGKAAKHSLSRYYA
MWNTPRPESATIDRDSAANISNACEKQKFYREVASTAESGWDFSTRWMRNTSDFTTLSTTSILPVDLNTYLLKLELDISMLAKVTGKSTIARRFSKASEA
RIQALKSVFWNAEKGQWFDYWLNHGSSLEGFSSYSWKGSNQNQNAFASNFVPLWIDQFHSDEVLVEQVLKSFQKSGLIRATGIATSLTNSGQQWDFPNGW
APLQHLIVEGLARSGSKKAKSLAEDIAVRWINSNYIVYNKTGSMHEKLDVQACGEFGGGGEYVPQTGFGWTNGVVLAFLEEFGWPHDRELGC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Lus10023034
[exp]
0 1
AT3G50930 BCS1 cytochrome BC1 synthesis (.1) Lus10041918
[exp]
1.7 0.8272
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Lus10002208
[exp]
2.6 0.7859
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Lus10013201
[exp]
4.2 0.7959
AT5G10530 Concanavalin A-like lectin pro... Lus10020446
[exp]
4.5 0.8054
AT5G59030 COPT1 copper transporter 1 (.1) Lus10016464
[exp]
6.3 0.7918
AT2G31880 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED... Lus10013675
[exp]
7.7 0.7903
AT3G25882 NIMIN-2 NIM1-interacting 2 (.1) Lus10041460
[exp]
12.2 0.7801
AT5G20480 EFR EF-TU receptor (.1) Lus10022864
[exp]
17.4 0.7946
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Lus10027146
[exp]
19.6 0.7478
AT4G32300 SD2-5 S-domain-2 5 (.1) Lus10043391
[exp]
19.6 0.7579

Lus10023034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.