Plant FIBer expression Database

Lus10023035 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24040 644 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032434
[exp]
863 / 0 AT4G24040 540 / 0.0 trehalase 1 (.1)
Lus10023034
[exp]
842 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1)
Lus10032435
[exp]
813 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G144000
[exp]
782 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1)
Potri.001G087100
[exp]
774 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1)
Potri.003G143900
[exp]
760 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1)
Potri.006G068300
[exp]
213 / 1e-66 AT4G24040 156 / 9e-46 trehalase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0059 6_Hairpin PF01204 Trehalase Trehalase
Representative CDS sequence
>Lus10023035 pacid=23170316 polypeptide=Lus10023035 locus=Lus10023035.g ID=Lus10023035.BGIv1.0 annot-version=v1.0
ATGGATGAAGAACAACAATCCATAGTCAACCAGTCAACTTCCGATGTAGTCCCCACCACGCCGCTCCTTTCCTTCCTGCAACGCCTTCAGGAGACCGCGC
TGCAAACCCTCGGCAAGGACAGTGGATTCGACGCCAAATACTACATCGACGTCTCGCTCAAGTCCGATCTGCCGACCACCCGGAGGGTGTTCGATGAATT
GCTCGAGACTAGTTCGTCAACTGGGAGTACAGTCCCCGTTGAGGATTTCCGTAAGTTTATGGCTGAGTATTTGGCTTCCGCGGGGAGTGATCTCGTGGCG
CATGAGCCATTGGATTTCGTGGCGGAGCCTGATGGGTTCTTGCCCAAAGTGGAGAATCCTGAGGTGAGGGCTTGGGCCCTGGAAGTTCATTCCTTGTGGA
AGATTCTCATCAGGAAAGTGTCTGGTGAAGTTTTGGAGCATCCTGAACGTCACACTCTGCTTCCCTTGCCTGAACCCATGGTCATTCCTGGTTCGCGGTT
TTTGGAGGTTTATTACTGGGATTCTTACTGGGTTATCAGGGGTCTTATGGCTAGCAAGATGTATGACACTGCCAAATCCATAGTGACTAATCTTATATAC
CTTTTGGATACATATGGGCATGTTCTTAATGGTGCAAGGTCCTATTATACCAACCGAAGTGAGCCTCCTCTCCTGAGTGCCATGGTATCTGAGATATACA
ATAGGACAGAGGACAAGGAATTTGCCAGGAAGGCACTGCCAGCACTGATCAAAGAGCACAAATTTTGGACTTCCGGCAAACACGTGATTACAATTCAGGA
CGCTCAAGGTGTGAAGTATAGTTTAAGTAGGTATTTTGCTATGTGGAACAAAGCTAGGCCTGAATCTGGCACCATTGATAAGGAAGCTGCTGCTAAGCTC
TCTAATGATGGTCTTGAGAAGCAGCTATTTTACAGGGAAGTGGCATCAACTGCTGAGTCAGGGTGGGATTTTAGTACTAGATGGATGAGAGATACTACTG
ACTACACGACACTGTCCACCACATCCATATTGCCTGTGGATCTGAACACTTACTTGCTGAAGCTGGAACTTGACATTGCCTTCCTGGCAAACGTCACCGG
AGATGATACCGTTGCAAAAAGTTTCTTGGAAGCCTCCCAAGCAAGAAAGCAGGCTATTCAATCTGTGTTCTGGAATTCTGAGAAAGGGCAGTGGTTTGAT
TACTGGGTTAATGATGATGAATCCTCAGATAAGGACTCTCAAACTCACAGGTGGAAAGTTTCCAACCAAAACCAGAACGCATTTGCTTCCAACTTCACCC
CATTTTGGATCGATATGTTCCATTCAGACACAAGTTTGGCAGAGCAAGTGACGGAAAGTCTCCAAAGTTCTGGCCTTGTACTTGATGCCGGGATTGCCAC
TTCCCTGACAAACTCAGGACAACAATGGGACTTTCCAAATGGGTGGCCGCCACTGCAGCATCAGATAGTTGAAGGTCTGGTGAAATCAGGGTCAAAGAAG
GCCAAGGAATTGGCAGAAGATATAGCAGTGAGATGGATAAATAGCAACTACACTGTGTACAAGAAGACGGGAGCAATGCACGAGAAGCTAGATGTGCGAG
CTTGTGGCGAGTTTGGGGGAGGTGGGGAATATGTCTCTCAGACTGGTTTTGGGTGGTCAAATGGAGTTGTGCTAGCCTTTCTGGAGGAGTTCGGTTGGCC
TCAGGACAGGAAGATAGGCTGCTAA
AA sequence
>Lus10023035 pacid=23170316 polypeptide=Lus10023035 locus=Lus10023035.g ID=Lus10023035.BGIv1.0 annot-version=v1.0
MDEEQQSIVNQSTSDVVPTTPLLSFLQRLQETALQTLGKDSGFDAKYYIDVSLKSDLPTTRRVFDELLETSSSTGSTVPVEDFRKFMAEYLASAGSDLVA
HEPLDFVAEPDGFLPKVENPEVRAWALEVHSLWKILIRKVSGEVLEHPERHTLLPLPEPMVIPGSRFLEVYYWDSYWVIRGLMASKMYDTAKSIVTNLIY
LLDTYGHVLNGARSYYTNRSEPPLLSAMVSEIYNRTEDKEFARKALPALIKEHKFWTSGKHVITIQDAQGVKYSLSRYFAMWNKARPESGTIDKEAAAKL
SNDGLEKQLFYREVASTAESGWDFSTRWMRDTTDYTTLSTTSILPVDLNTYLLKLELDIAFLANVTGDDTVAKSFLEASQARKQAIQSVFWNSEKGQWFD
YWVNDDESSDKDSQTHRWKVSNQNQNAFASNFTPFWIDMFHSDTSLAEQVTESLQSSGLVLDAGIATSLTNSGQQWDFPNGWPPLQHQIVEGLVKSGSKK
AKELAEDIAVRWINSNYTVYKKTGAMHEKLDVRACGEFGGGGEYVSQTGFGWSNGVVLAFLEEFGWPQDRKIGC

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Lus10023035
[exp]
0 1
AT2G01660 PDLP6 plasmodesmata-located protein ... Lus10036006
[exp]
1.4 0.9488
AT1G67710 GARP ARR11 response regulator 11 (.1) Lus10006446
[exp]
1.7 0.9455
AT2G23520 Pyridoxal phosphate (PLP)-depe... Lus10022447
[exp]
1.7 0.9500
AT2G33580 Protein kinase superfamily pro... Lus10019662
[exp]
5.8 0.9248
AT2G23520 Pyridoxal phosphate (PLP)-depe... Lus10016752
[exp]
8.5 0.9224
AT4G29890 choline monooxygenase, putativ... Lus10032689
[exp]
11.5 0.9374
AT5G55860 Plant protein of unknown funct... Lus10022531
[exp]
11.5 0.9360
AT1G14180 RING/U-box superfamily protein... Lus10036764
[exp]
12.8 0.9405
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Lus10040394
[exp]
13.8 0.9180
AT1G26870 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain co... Lus10015367
[exp]
14.0 0.9009

Lus10023035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.