Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16930 66 / 6e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 60 / 4e-10 F-box/RNI-like superfamily protein (.1) AT3G03360 60 / 5e-10 F-box/RNI-like superfamily protein (.1) AT5G41630 59 / 8e-10 F-box/RNI-like superfamily protein (.1) AT3G59230 59 / 1e-09 RNI-like superfamily protein (.1) AT1G60400 58 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G02700 58 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G02920 57 / 2e-09 F-box/RNI-like superfamily protein (.1) AT3G18150 57 / 3e-09 RNI-like superfamily protein (.1) AT4G00160 57 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023037 [exp] 321 / 2e-110 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 171 / 3e-51 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10026190 [exp] 153 / 7e-44 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 150 / 8e-43 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 150 / 1e-42 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 142 / 2e-40 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 143 / 3e-40 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 140 / 2e-39 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 140 / 5e-39 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 90 / 1e-20 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 89 / 5e-20 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 74 / 7e-15 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024200 [exp] 68 / 9e-13 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 65 / 1e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 60 / 3e-10 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 58 / 2e-09 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 57 / 5e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G121500 [exp] 56 / 9e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 55 / 2e-08 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023036 pacid=23170353 polypeptide=Lus10023036 locus=Lus10023036.g ID=Lus10023036.BGIv1.0 annot-version=v1.0 ATGATGAGCAATCTTCCCGACAGGTTAAGCAATCTTCCGGATGCCATCATTCACCACATCCTTTCGTTCCTCGACACCAAATTGGCCGTCCAAACCTCCG TACTGTCCCGATCGTGGAGGCACGTATGGAAACATCTCCACACCCTCAATCTGCACGCAGACTCTTCCCCAAACTTGTTGAGTTTCGTCAAGTTTGTGGA AATGGCTCTGCTTCTACGCTACGAACTCAATCTCTCCAAGGTTAGGTTCATGGTCGACGACTACTATGCAAGCCGCTGGACTCAGAATACGCTTGTGCTG ACATTGAATTCGGTAATCAGATATGCATTCTCCAATCACACTCGGCATTTAGTCGTCATCAAACGGACGGAAATAAATCCGAATTTATCCAAATTGTTCG GCTCAGTCATGGCTCTCAATCTTGAAACCCTAGCATTAATAGGTATCGCCCTCGATGCAAGATTCGGATCTTCCCCTGCTCGTTTCCCAATGTTGACCAC ATTGAATTTGACCGAGTGCATGATTTACTATAATCGGCCGCCCAAAGAAGAAGAACGGTTCGATCCTTTCTCGAAATTGAAATTTCCTTGTCTGAAGCAT TTGATCTTCAACAATAGTTCCATGATCAAGAGCAGTTACAATAACCCTTGTAAGATACTAAGAGTTTCTGGACTTCAATTGCTTAGCTTGAAACTCTCCC TTTATGGAGTCTACAACCTTGAAATATCCGCTCCCAAACTCGAGTCATTCGCTCTTTGCGTCGTAGGGAAACCCATGGGGTTCCCGGAGCTGACTCTTCC TTCCCTCAAACATGCTGATATTTAG
AA sequence Show only first row Show all	>Lus10023036 pacid=23170353 polypeptide=Lus10023036 locus=Lus10023036.g ID=Lus10023036.BGIv1.0 annot-version=v1.0 MMSNLPDRLSNLPDAIIHHILSFLDTKLAVQTSVLSRSWRHVWKHLHTLNLHADSSPNLLSFVKFVEMALLLRYELNLSKVRFMVDDYYASRWTQNTLVL TLNSVIRYAFSNHTRHLVVIKRTEINPNLSKLFGSVMALNLETLALIGIALDARFGSSPARFPMLTTLNLTECMIYYNRPPKEEERFDPFSKLKFPCLKH LIFNNSSMIKSSYNNPCKILRVSGLQLLSLKLSLYGVYNLEISAPKLESFALCVVGKPMGFPELTLPSLKHADI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	0	1
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	1.0	1.0000
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	1.7	1.0000
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	2.0	1.0000
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	2.0	1.0000
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	2.2	0.9188
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	2.6	0.8332
AT5G28823			unknown protein		Lus10040056 [exp]	3.5	0.8646
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	3.6	0.7493
					Lus10025786 [exp]	3.7	0.7429
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10024331 [exp]	4.0	0.8273

Compare expression of checked genes

Lus10023036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.