Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16930 73 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 67 / 2e-12 F-box/RNI-like superfamily protein (.1) AT5G02700 67 / 3e-12 F-box/RNI-like superfamily protein (.1) AT1G78760 63 / 5e-11 F-box/RNI-like superfamily protein (.1) AT5G22610 62 / 9e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22720 62 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT1G60400 61 / 2e-10 F-box/RNI-like superfamily protein (.1) AT5G22730 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G44490 61 / 3e-10 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G66310 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023036 [exp] 312 / 4e-107 AT1G16930 66 / 3e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 168 / 8e-50 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 166 / 5e-49 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 165 / 3e-48 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 155 / 9e-45 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 155 / 2e-44 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10001507 [exp] 153 / 9e-44 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 148 / 5e-42 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029357 [exp] 138 / 5e-38 AT3G28410 79 / 1e-15 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 94 / 6e-22 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G002100 [exp] 86 / 8e-19 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 83 / 4e-18 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024300 [exp] 65 / 1e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 61 / 3e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.001G322900 [exp] 57 / 4e-09 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G104200 [exp] 57 / 4e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G121400 [exp] 57 / 5e-09 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104300 [exp] 57 / 5e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 56 / 1e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023037 pacid=23170432 polypeptide=Lus10023037 locus=Lus10023037.g ID=Lus10023037.BGIv1.0 annot-version=v1.0 ATGATCAATCTTTCTACCCAAAACAAGAGAGACGTCACTAGCAATATTCTTACCGACAGGTTAAGCAATCTTCCCGACTCGATTATTCACCACATTCTTT CGTTCCTCGACACCAAATTTGGCGTCCAAACCTCCGTATTGTCCCGATCATGGAAGCATGTATGGAAACATATCCACACCCTAAATCTGCACGCAGAATC GTTCCCAAACACATCGAGTTTCGTCAAGTTCGTGGACAAGGCTCTGCTTCTACGCTACGAACTCAATCTCTGCAAGGTTAGATTCATTGTCGACAACGCG TATGCAAGCCGCTGGAATAAGATGACGCTTGAGGAACGAGCATGCGAGGTAATCAGATATGCATTGTCTAATCACACTCGGCATTTAGTCGTCGTCAACC CGGATATCAATTGGAAGTTCTCCGAATTGTTTATCTTGGACATGACTTGCAATCTGGAAACCCTAGAATTAAGACGTATCACCCTTGATGAAAGATTCGG ATCTTCCGCTGCTGGTTTCCCAGTGCTGGCGACTTTGAATTTGAGCGAGTGCTCGATTTCCTTCTCCTCCGTTGAAGAAGGGTTTGATCCTTTCTCCAAA TTTCCTTGTCTGAAGCACTTGACCTTCAACAATAGTTTCATCCAGGGGAATTACAGTCACCAGTGTAAGATATTTAGAGTTTCTGGACTTCAATTGCTTA GCTTGAAACTCGGGCTTTATGGAGTCTACAAGGTCGAAATATCCACACCCAAACTCGAGTTATCAACTCTCCGCATCGTTGGGAGACCTATGGCGTTCCC GGAGCTGACTCTTCCTTCCCTCGAACATGCTGAAATTCGGATTAACTGCGACTTTTTCGAATTTCTAACGTGA
AA sequence Show only first row Show all	>Lus10023037 pacid=23170432 polypeptide=Lus10023037 locus=Lus10023037.g ID=Lus10023037.BGIv1.0 annot-version=v1.0 MINLSTQNKRDVTSNILTDRLSNLPDSIIHHILSFLDTKFGVQTSVLSRSWKHVWKHIHTLNLHAESFPNTSSFVKFVDKALLLRYELNLCKVRFIVDNA YASRWNKMTLEERACEVIRYALSNHTRHLVVVNPDINWKFSELFILDMTCNLETLELRRITLDERFGSSAAGFPVLATLNLSECSISFSSVEEGFDPFSK FPCLKHLTFNNSFIQGNYSHQCKIFRVSGLQLLSLKLGLYGVYKVEISTPKLELSTLRIVGRPMAFPELTLPSLEHAEIRINCDFFEFLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	0	1
					Lus10036058 [exp]	1.0	0.8969
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002600 [exp]	3.5	0.8012
AT3G57500			unknown protein		Lus10012197 [exp]	3.6	0.7204
AT5G41720			unknown protein		Lus10006473 [exp]	3.7	0.8389
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	6.9	0.6713
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	9.3	0.8097
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	10.9	0.7432
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020734 [exp]	17.0	0.7437
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	17.7	0.7365
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	18.0	0.7314

Compare expression of checked genes

Lus10023037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.