Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60400 59 / 4e-10 F-box/RNI-like superfamily protein (.1) AT1G69630 58 / 1e-09 F-box/RNI-like superfamily protein (.1) AT1G66300 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 57 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G18780 57 / 3e-09 F-box/RNI-like superfamily protein (.1.2) AT3G18150 56 / 4e-09 RNI-like superfamily protein (.1) AT5G38570 56 / 4e-09 F-box/RNI-like superfamily protein (.1) AT5G41630 56 / 4e-09 F-box/RNI-like superfamily protein (.1) AT5G22610 56 / 5e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G16930 55 / 8e-09 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029586 [exp] 183 / 5e-56 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10023042 [exp] 162 / 2e-48 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10006319 [exp] 158 / 7e-48 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 167 / 8e-48 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 159 / 2e-46 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 152 / 3e-44 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029587 [exp] 147 / 4e-42 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 149 / 5e-42 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10008245 [exp] 138 / 9e-40 AT1G69630 42 / 3e-04 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 75 / 1e-15 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 66 / 2e-12 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024300 [exp] 62 / 4e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 61 / 1e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104100 [exp] 60 / 2e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 59 / 3e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G011200 [exp] 58 / 9e-10 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 57 / 2e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 57 / 2e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 53 / 4e-08 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023039 pacid=23170307 polypeptide=Lus10023039 locus=Lus10023039.g ID=Lus10023039.BGIv1.0 annot-version=v1.0 ATGGCTCCCGAAGGAGTTGACAGAATAAACAATCTCCCAGAATCCATGCTTCAGCACATCCTCTCCTTCCTCAACACTAAATCCGCTGTTCAAACTTGTG TATTGTCCAAGCAGTGGAAATCCACCTGGAAACATGTGCATTCTCTCAATCTGGAGCTGAACTTTGATGAATTTTTGAGGTACGAAAGGTTTGTTGACAA TGTCTTGTCCCTTCGCCATCCCCTTCATGTTAGCAAGGTTTGTTGGTACACATATGCCTACTCTCACGGTCCTATTGGTTGCGAGTTTAGTCTGTTCAGA AGGGTTGTCCAATATGCTGTGTCCCATGAGCTAACGCTTCCTTCCCTTGTTCATGCTGATGTTCGGAGCAGTAATTGGCATTCAATGTATGAGGTTTATG ATATTGACATAGAGTCTCTGGTTTACATGTTCCATGGCTTACATAACGTGGAATCTTTGTCACTATGTGGTGATATCTGCAATGCAGTCCGTACAAATTC CAAGTTTCTAGAGCAACAGCCATGTCCTTTTATGGAACTGAAGAACTTAAATATAGAGTTTGACTCTAACTACGGGATACCTTACAAGGTTTTGGATAGT TATTTTCTTAACGGATCTTCTGATGCTTCCCTAAACATCCAGATACGAGAGGAATATGAATATTGGGGAGAAGAGATTATTTAA
AA sequence Show only first row Show all	>Lus10023039 pacid=23170307 polypeptide=Lus10023039 locus=Lus10023039.g ID=Lus10023039.BGIv1.0 annot-version=v1.0 MAPEGVDRINNLPESMLQHILSFLNTKSAVQTCVLSKQWKSTWKHVHSLNLELNFDEFLRYERFVDNVLSLRHPLHVSKVCWYTYAYSHGPIGCEFSLFR RVVQYAVSHELTLPSLVHADVRSSNWHSMYEVYDIDIESLVYMFHGLHNVESLSLCGDICNAVRTNSKFLEQQPCPFMELKNLNIEFDSNYGIPYKVLDS YFLNGSSDASLNIQIREEYEYWGEEII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60400			F-box/RNI-like superfamily pro...		Lus10023039 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	1.4	0.8223
AT3G53220			Thioredoxin superfamily protei...		Lus10026540 [exp]	5.0	0.8040
					Lus10040955 [exp]	5.5	0.7706
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	6.3	0.8181
AT1G01770			unknown protein		Lus10036349 [exp]	6.5	0.8147
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	12.3	0.8139
AT3G53220			Thioredoxin superfamily protei...		Lus10013827 [exp]	13.3	0.7826
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	16.8	0.8035
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	17.3	0.7753
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	22.2	0.7612

Compare expression of checked genes

Lus10023039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.