Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14103 60 / 1e-10 F-box/RNI-like superfamily protein (.1.2) AT1G66300 60 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G18780 59 / 4e-10 F-box/RNI-like superfamily protein (.1.2) AT4G14096 59 / 4e-10 F-box/RNI-like superfamily protein (.1) AT1G32020 56 / 7e-10 F-box family protein (.1) AT1G69630 58 / 1e-09 F-box/RNI-like superfamily protein (.1) AT1G78760 57 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G41840 56 / 3e-09 F-box/RNI-like superfamily protein (.1) AT5G41630 56 / 4e-09 F-box/RNI-like superfamily protein (.1) AT3G18150 55 / 7e-09 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014141 [exp] 141 / 3e-40 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029587 [exp] 131 / 2e-36 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10023039 [exp] 120 / 1e-33 AT1G60400 59 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 152 / 2e-33 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 94 / 2e-22 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 92 / 1e-21 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10034161 [exp] 90 / 4e-21 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 91 / 5e-21 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10042331 [exp] 87 / 8e-21 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G337200 [exp] 71 / 2e-14 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.001G322900 [exp] 62 / 4e-11 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.015G002100 [exp] 62 / 4e-11 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G024300 [exp] 62 / 5e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 59 / 3e-10 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G011200 [exp] 58 / 7e-10 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G024200 [exp] 58 / 7e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104100 [exp] 56 / 4e-09 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 56 / 5e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.015G002001 [exp] 53 / 3e-08 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023040 pacid=23170409 polypeptide=Lus10023040 locus=Lus10023040.g ID=Lus10023040.BGIv1.0 annot-version=v1.0 ATGACCAAAAACAGCAACATCCAGCTAGAGATGACAGCCGGAGGAGGAGTTGGCAGAATAAGCAATCTACCAAGCTCCATCATTCACCACATCCTCTCCT TCCTTGACACAAAATCCGCCGTTCAAACTTGTGTATTGTCCAAGCAATGGGAATCCACCTGGAAACATATTCATTCTCTCAATCTGCAGAACGTTTACTT CAATGAATATTCGAGGTACGAAATGTTTGTTGACAAAGTCTTGTCCCTTCGCCATCCCCTTCATGTTAGCATTATTTCTATCGGTCCATGGGGAGCGAGT TTAGTTTGCTCAGACGGGTCGTCCAATATGCTGTGTCCCATGGTGCTCAACATTTCAACATTCAACCCATTAATATTATTGCACCCGAAACGTCTCTTCT CGAATTGTTTGACTACATCTGTGACACTTATGTACTCTAAGGAGGTTCGTGAGGAGGAGCTAAAATCATACCACTTGCTTCAGTTTTGGCGTTCATTGTC GTACACGCGCCCGGCAGGGCACGAGATATGGGCTGAGCATGATGCTGCTGTGATGCTATGGACCGCAACATTCTCGATGGGATGGTTCAGACTATTTGCG CTAGAGGAGGTCGTCTATAAGGGCGTTGAGTCGATTAGTTCGGTCAGCATTTCAATCCGAGTATGA
AA sequence Show only first row Show all	>Lus10023040 pacid=23170409 polypeptide=Lus10023040 locus=Lus10023040.g ID=Lus10023040.BGIv1.0 annot-version=v1.0 MTKNSNIQLEMTAGGGVGRISNLPSSIIHHILSFLDTKSAVQTCVLSKQWESTWKHIHSLNLQNVYFNEYSRYEMFVDKVLSLRHPLHVSIISIGPWGAS LVCSDGSSNMLCPMVLNISTFNPLILLHPKRLFSNCLTTSVTLMYSKEVREEELKSYHLLQFWRSLSYTRPAGHEIWAEHDAAVMLWTATFSMGWFRLFA LEEVVYKGVESISSVSISIRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66300			F-box/RNI-like/FBD-like domain...		Lus10023040 [exp]	0	1
					Lus10004996 [exp]	5.9	0.8324
					Lus10003285 [exp]	8.4	0.8324
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003300 [exp]	10.2	0.8324
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	11.8	0.8324
					Lus10000363 [exp]	13.2	0.8324
					Lus10000977 [exp]	14.5	0.8324
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	15.7	0.8324
AT5G04350			Plant self-incompatibility pro...		Lus10002747 [exp]	16.7	0.8324
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	17.7	0.8324
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	18.7	0.8324

Compare expression of checked genes

Lus10023040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.