Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 61 / 3e-10 F-box/RNI-like superfamily protein (.1) AT5G02910 59 / 2e-09 F-box/RNI-like superfamily protein (.1.2) AT5G56420 57 / 5e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G10400 57 / 7e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT2G26030 56 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT3G18150 56 / 2e-08 RNI-like superfamily protein (.1) AT5G56690 54 / 5e-08 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G66300 54 / 6e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G78760 54 / 6e-08 F-box/RNI-like superfamily protein (.1) AT3G62440 54 / 7e-08 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032432 [exp] 590 / 0 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 363 / 1e-123 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10029587 [exp] 317 / 3e-107 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 321 / 5e-105 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 306 / 8e-103 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029589 [exp] 305 / 2e-100 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 293 / 5e-98 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10006319 [exp] 272 / 3e-91 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10029588 [exp] 231 / 1e-75 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 113 / 1e-28 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 109 / 2e-27 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 79 / 1e-16 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 64 / 2e-11 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 64 / 3e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 62 / 9e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 62 / 1e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 56 / 2e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 54 / 4e-08 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002001 [exp] 51 / 4e-07 AT2G04230 59 / 9e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10023042 pacid=23170342 polypeptide=Lus10023042 locus=Lus10023042.g ID=Lus10023042.BGIv1.0 annot-version=v1.0 ATGACAGCCACAGGAGGAGTTGACAGATTAAGCAATCTCGCAGAGTCCATTATTCACCACATCCTCTCCTTCCTCGACACTAAATCCGCCGTCAAAACAT GTGTATTGTCCAAGCAGTGGGAATGCACCTGGAAACATGTTCATACTCTGAATCTGAATCTTTACTTCAGTGAATTCGAGAGGTACGAAACCTTTGTTGA CAATGTCTTGTCCCTACGCTACCCGCTGCATGTTGGCAAGGTTATATGGTCCACATTTTCATACTCTGACGCTCCTGATGGTTGCGAGTTTTATCTGCTC AAAAGGATCGTCCGATATGCAGTGTCCCATGGTGCTCAACATTTCTGCTTACAGCCCAGAAATTATTATGAACCTCATATTTCTCTTCTCAAATTGTTTG ATTCCATCCCTGACATTGTACGAACCCTGGAACTAGTGCGGTTTGACATCGATTGTCGACCTGTATGTTCTAGATTCCAGTTGCTAACAACATTAAAACT GGTGAGTTGTCGGTTCTTAACTGATCGAGAGCTTTTCGATCCTTTTTCTCAATTTCACTGTTTGAATGACTTGGTATTGCGACATTGCTCGTGGGAAAGT GAAGGCGGTGATCACCGACCTGTGAGATTGAGGGTTTCCGGACTCGAGTTGGGCAGGTTGAGCCTCTTAGCCATTAATGTGTGGAAGCTGGAAATATTTG CGCCCAAACTCAAATATTTCAAATTGTCAACTCGCGAAATCATGGAGTTTTCGGAGCTAACCCTTCCGTCCCTTATTCATGCTGATATTACAAACCATTG GGGATATAGTGACGATAGCGATTATGCTATTGACGAAGAACATCTGGTCATCATGTCCCATGGCATACATAACGTGGAATATCTGACGCTATGCAAAGAG ATCAAAGAGGTACGTGCATCTGGATGCTTTGCTACTTCTAGCCAATGA
AA sequence Show only first row Show all	>Lus10023042 pacid=23170342 polypeptide=Lus10023042 locus=Lus10023042.g ID=Lus10023042.BGIv1.0 annot-version=v1.0 MTATGGVDRLSNLAESIIHHILSFLDTKSAVKTCVLSKQWECTWKHVHTLNLNLYFSEFERYETFVDNVLSLRYPLHVGKVIWSTFSYSDAPDGCEFYLL KRIVRYAVSHGAQHFCLQPRNYYEPHISLLKLFDSIPDIVRTLELVRFDIDCRPVCSRFQLLTTLKLVSCRFLTDRELFDPFSQFHCLNDLVLRHCSWES EGGDHRPVRLRVSGLELGRLSLLAINVWKLEIFAPKLKYFKLSTREIMEFSELTLPSLIHADITNHWGYSDDSDYAIDEEHLVIMSHGIHNVEYLTLCKE IKEVRASGCFATSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	0	1
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	1.7	0.9309
					Lus10004679 [exp]	2.0	0.9069
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	7.3	0.8996
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10002397 [exp]	7.5	0.8598
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	8.5	0.8749
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	9.0	0.8054
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	9.5	0.8547
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	10.7	0.8626
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	11.0	0.8524
AT5G01880			RING/U-box superfamily protein...		Lus10025145 [exp]	11.0	0.6723

Compare expression of checked genes

Lus10023042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.