Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64550 1163 / 0 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G42020 1137 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 1135 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 967 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 770 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 763 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 759 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 759 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 754 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 728 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032431 [exp] 1365 / 0 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 1122 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 1073 / 0 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10032430 [exp] 1038 / 0 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 880 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10021345 [exp] 795 / 0 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10002319 [exp] 771 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10005953 [exp] 765 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 759 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087300 [exp] 1179 / 0 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.003G143600 [exp] 1167 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 1167 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 1117 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 966 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G205800 [exp] 769 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 763 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 763 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 760 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 758 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023043 pacid=23170444 polypeptide=Lus10023043 locus=Lus10023043.g ID=Lus10023043.BGIv1.0 annot-version=v1.0 ATGGCAGGCTCTCGAAGAGCACGCGGTCTCGTCGTCTCTGCAGTTCTCTTGTTCGGTTGCCTATTCGCAATTTCCATTGCGAAAGATGAAGCCCCCAAGT TAGGCACAGTTATTGGTATAGATCTTGGAACTACGTACTCTTGCGTTGGTGTGTACAAGAACGGTCACGTGGAAATCATAGCCAATGACCAAGGAAACCG TATCACCCCATCGTGGGTTGCGTTCACCGACAGTGAGAGACTGATCGGCGAGGCTGCTAAGAATCAAGCAGCTGTGAACCATGAAAGGACTGTCTTTGAT GTCAAGAGGCTTATCGGAAGAAAGTTTGAGGACAAAGAAGTCCAGAAGGACATGAAACTTGTCCCCTATAAGATTGTGAACAGGGACGGAAAGCCTTATA TCCAGGTAAAGATCAAGGATGGAGAGACCAAGGTCTTCAGTCCTGAAGAAGTTAGTGCCATGATCTTGACCAAGATGAAGGAAACAGCAGAAGCTTTCCT TGGAAAGAAAATCAAGGATGCCGTTGTCACTGTTCCTGCCTACTTCAATGATGCCCAGAGACAGGCCACCAAGGATGCTGGTGTTATTGCTGGGCTTAAT GTAGCTAGGATCATCAACGAGCCTACTGCTGCTGCCATCGCCTATGGTTTGGACCAAAAAGGTGGCGAGAAGAACATCCTTGTCTTCGATCTTGGTGGTG GTACTTTTGATGTTAGTGTCTTGACTATTGACAACGGAGTTTTTGAGGTCCTTTCAACCAACGGTGACACCCATTTGGGAGGTGAGGACTTCGATCAGAG AATCATGGAGTACTTCATCAAGTTGATCAAGAAGAAGCACGGGAAGGACATCAGCAAGGACAACAGGGCTCTCGGAAAGCTCAGGAGGGAAGCTGAGCGT GCCAAGAGAGCTCTCAGTAGCCAGCATCAGATCCGTGTGGAAATCGAATCACTCTTTGACGGCGTTGACTTCTCCGAACCACTCACCAGAGCTCGTTTCG AGGAATTGAACAACGATCTGTTTAGGAAGACCATGGGACCCGTGAAGAAGGCCATGGACGATGCAGGCTTGGAAAAGAACCAGATTGATGAGATTGTCCT AGTCGGAGGAAGTACCAGAATTCCAAAGGTCCAACAGCTCCTCAAGGATTTCTTCAACGGCAAAGAGCCCAACAAGGGAGTTAACCCTGATGAGGCTGTT GCCTATGGTGCCGCTGTCCAGGGTGGCATTCTCAGCGGGGAAGGTGGCGATGAAACCAAGGACATTCTTCTTCTTGATGTCGCACCCCTCACATTGGGTA TTGAAACCGTTGGAGGAGTCATGACCAAGTTGATCCCAAGGAACACAGTTATTCCCACCAAGAAATCCCAAGTTTTCACTACATACCAGGATCAGCAGAC GACTGTCTCCATTCAGGTATTTGAAGGTGAAAGGAGTATGACCAAGGACTGTAGGTTGCTCGGGAAATTCGACCTTACCGGAATCCCTCCGGCTCCCAGA GGAACCCCTCAAATTGAGGTGACATTTGAAGTGGACGCGAACGGTATCCTGAACGTGAAAGCAGAGGACAAGGCCTCCGGCAAGGCGGAGAAGATCACGA TCACCAACGAGAAGGGGCGTCTGAGCCAGGAAGAGATCGAGCGGATGGTCCGCGAGGCCGAGGAGTTTGCCGACGAGGACAAGAAGGTCAAGGAGAGGAT CGACGCCCGTAACAGCTTGGAGACATACGTCTACAACATGAAGAACCAGATCAACGACAAGGACAAGCTGGCTGACAAGCTGGAAGGCGACGAAAAGGAG AAGGTTGAAGCCGCCACCAAGGAGGCTCTTGAATGGTTGGATGACAACCAGACGGCCGAGAAGGAAGACTACGAGGAGAAGCTCAAGGAGGTGGAAGCCG TCTGTAACCCGATCATCGCCGCCGTGTACCAGCGTTCAGGTGGTGCTCCAGAAGGCGGTGCTTCCGGTGATGACGAGGACGATTCTCACGACGAACTAAG TGCGGATGTACGTCAGTTGGAGATCTCAGCAGCCTTGCTTGAAAGCATGCATCGGGTAAGTAGCGTGGGATACGGCCATGCCATCTTCGAAACCGGCATC CAACCGGTCGCAACTGCTATCAGCGGAGGCATGCTTGATGTTTCAAAAGAGTTCGCCCGGATGCGGCTTTTTTGCTTCGTCATTTCTCCTGCGGCCATGG CCGAAGTGGCGAGCTCACTGGTGCACCAAGTGCTGGGAAAGCGAATCGAGGACGTGGATCAGCCTATTGTCGACTACATCGTTAACGTGCTCGCTGATGA GGACTTCGATTTCGGCGAAGATGGTGAGGGCATTTTCCAAGCACTCGGCGAGCTTATCGTCGCTGCTGAATGCGTTTCCGATATGCCTGAGTGCCGCCAG GTCTGTGGCAAATTGTCTGAGAAGTTTGGAAAGCATGGACTGGCCAAACCAAAACCGACTGTGCGAAGTCTGACCACACCTTTTAGAATGAATGAAGGGA TGGAAGAGGAAGCTCCTAAGAAGAAGGTTGAGCCGGTAGATGGTCCTTTGTTGACTGAACGTGACAAATTGAAGATAGAAAGGAGAAAGAGGAAGGACGA GCGGCAGCGAGAGGCACAATATCAAGTCCATCTTTCTGAAATGGAAGCAGTAAGAGCTGGGATGCCTCCTGTATCTGTAAATCATGATAATAGTGGTGGA CCTACTGTCAAGGATCTTCATATGGACAATTTCAATATTTCCGTTGGTGGTCGTGATCTTATTGTTGATGGTTCACTGACTCTCTCTTTTGGAAGACACT ACGGACTTGTTGGGAGAAATGGTACTGGGAAAACCACTTTTTTGAGGCACATGGCCATGCACGCAATTGCTGGTATTCCTGCAAACTGCCAAGTTCTACA CGTTGAGCAAGAAGTAGTTGGAGACAATACAACAGCTTTACAATGTGTACTAAACTCTGATATTGAAAGAACCCAGCTTCTGGATGAGGAAGCTCGCATA CTTGCACAGCAGAGAGAATTAGAGGTTGAGCATGCACTTGGGAATGGAAAAGACCCTAATGGGGTAATTGACAAAGATGCAATGTCGGGGAGACTTGAGC AAATCTACAAAAGGCTCGAGTTTATTGATGCTTACTCTGCTGAAGCACGTGCTGCTTCCATTCTTGCGGGACTCAGTTTCACTTCAGAGATGCAACACAA GGCAACAAAAACATTTTCAGGAGGATGGAGGATGAGAATTGCCCTTGCTCGTGCCCTGTTCATTGAACCTGACCTGTTGCTTCTTGATGAACCCACGAAT CATCTTGATCTTCATGCTGTCCTGTGGTTAGAGTCTTACCTGGTAAAATGGCCAAAGACATTTCTTGTTGTATCTCATGCTAGAGAATTTCTGAACACGG TGGTCACAGATGTTATCCACTTGCAAAATCAAAAACTGACCTGTTACAAAGGTAATTATGATACATTTGAGAGGACACGAGCTGAACAGCTTAAGAACCA ACAAAAAGCCTTTGAGTCAAATGAACGAGTGCGAGCCCATATGCAGACCTTTATTGACAAGTTCCGATATAATGCTAAGAGGGCATCTCTTGTCCAGTCG AGAATCAAGGCATTAGATCGGATTGGTCATGTGGACGAAGTTGTAAATGATCCTGACTATAAGTTTGAGTTTCCCACTCCAGATGATAGACCCGGGCCAC CTATTATAAGTTTCAATGATGCATCATTTGGTTATCCAGGCGGCCCCCTATTATTTAAGAACTTGAATTTTGGTATAGATTTGGATAGCCGCATTGCAAT GGTTGGGCCCAATGGGATTGGAAAATCAACAATACTCAAACTAATCTCTGGAGATCTTGAACCCAGCTCGGGTACCGTGTTCCATTCAGCGAAGGTTCGT ATTGCTGTGTTTAGTCAGCATCACGTTGATGGACTGGACCTGTCTTCCAATCCCCTTTTGTACATGATGCGCTGCTTCCCTGGAGTACCCGAACCGAAGC TACGAGCTCATTTGGGTTCTTTTGGTGTGACCGGAAACCTTGCCCTTCAACCCATGTACACTCTCTCTGGTGGTCAAAAGAGTAGGGTTGCATTTGCAAA GATTACTTTCAAGAAACCACATCTGATCTTACTCGATGAACCGTCCAATCATCTTGATTTGGATGCAGTGGAGGCGTTAATCCAAGGCCTTGTTATCTTT CAAGGAGGCATTGTCATGGTTAGTCACGACGAGCATCTGATCTCCGGAAGTGTGGACGAGCTCTGGGCAGTTTCCGAGGGAAGGATATCACCTTTCCACG GGACATTCCAGGATTACAAGAAGCTACTCCACTCTTAA
AA sequence Show only first row Show all	>Lus10023043 pacid=23170444 polypeptide=Lus10023043 locus=Lus10023043.g ID=Lus10023043.BGIv1.0 annot-version=v1.0 MAGSRRARGLVVSAVLLFGCLFAISIAKDEAPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNHERTVFD VKRLIGRKFEDKEVQKDMKLVPYKIVNRDGKPYIQVKIKDGETKVFSPEEVSAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLN VARIINEPTAAAIAYGLDQKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAER AKRALSSQHQIRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDFFNGKEPNKGVNPDEAV AYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRLLGKFDLTGIPPAPR GTPQIEVTFEVDANGILNVKAEDKASGKAEKITITNEKGRLSQEEIERMVREAEEFADEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLEGDEKE KVEAATKEALEWLDDNQTAEKEDYEEKLKEVEAVCNPIIAAVYQRSGGAPEGGASGDDEDDSHDELSADVRQLEISAALLESMHRVSSVGYGHAIFETGI QPVATAISGGMLDVSKEFARMRLFCFVISPAAMAEVASSLVHQVLGKRIEDVDQPIVDYIVNVLADEDFDFGEDGEGIFQALGELIVAAECVSDMPECRQ VCGKLSEKFGKHGLAKPKPTVRSLTTPFRMNEGMEEEAPKKKVEPVDGPLLTERDKLKIERRKRKDERQREAQYQVHLSEMEAVRAGMPPVSVNHDNSGG PTVKDLHMDNFNISVGGRDLIVDGSLTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIAGIPANCQVLHVEQEVVGDNTTALQCVLNSDIERTQLLDEEARI LAQQRELEVEHALGNGKDPNGVIDKDAMSGRLEQIYKRLEFIDAYSAEARAASILAGLSFTSEMQHKATKTFSGGWRMRIALARALFIEPDLLLLDEPTN HLDLHAVLWLESYLVKWPKTFLVVSHAREFLNTVVTDVIHLQNQKLTCYKGNYDTFERTRAEQLKNQQKAFESNERVRAHMQTFIDKFRYNAKRASLVQS RIKALDRIGHVDEVVNDPDYKFEFPTPDDRPGPPIISFNDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLEPSSGTVFHSAKVR IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEPKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLILLDEPSNHLDLDAVEALIQGLVIF QGGIVMVSHDEHLISGSVDELWAVSEGRISPFHGTFQDYKKLLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10023043 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	1.4	0.8625
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	2.0	0.8534
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	2.0	0.8968
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10027310 [exp]	2.4	0.8599
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	8.8	0.8265
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	8.9	0.8306
AT4G16660			heat shock protein 70 (Hsp 70)...		Lus10039014 [exp]	9.6	0.7854
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	13.6	0.8447
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	15.0	0.8413
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	17.7	0.8233

Compare expression of checked genes

Lus10023043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.