Plant FIBer expression Database

Lus10023044 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18880 44 / 4e-05 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032429
[exp]
77 / 2e-18 ND /
Lus10040060
[exp]
56 / 6e-10 AT5G18880 40 / 1e-04 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Lus10001530
[exp]
50 / 1e-06 AT5G23110 5981 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Lus10017305
[exp]
39 / 0.0004 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10023044 pacid=23170438 polypeptide=Lus10023044 locus=Lus10023044.g ID=Lus10023044.BGIv1.0 annot-version=v1.0
ATGAGGTTACGAGCTCTGATTCGTTCGACCAATGAGGTTGAAGGTCGTGGTGTTAGTAGCGTGGCCGGGTGTCATTGGATGTTCGACGTGGCGGTCTCGG
CTCCCCTTTTCCCCGAACTTAACGATCTAGTATTAATGGGCCCTACACTCTTCTACTCCGAATCCGAAGACCAAGCCAAGCCAAGCCAAGACCCCTCATG
TTATATGTGTGAGAATGGCTGTGAGACCCCCTCTCACCTCTTTATCATTTGTCTGTATGCTGCTTATTTTAGAAAGACCTTATTTCCCCGTGTCGTTTAC
CCTGCTGATTGGGATGAGGAGATTAGCTGGATGGTAACTAATTTCTCAGGTCGATCTGCTGCTTCGAGAGCTGCCAATCTCATTTGGAGAAGTATGGTTA
GCCATGTTTGGAAAGAACGGTGTCAAAGAATTTTTTCAGGTGCTTGTTTGGATAAGAAGCAGCTTGGGAGGAAGATTTGCTGGGAGGCCTCGATGGTTAA
TTATCTATCCACACCAGCATCAGGTGGTTCCCGTGGCTCTGAAGCTGCTGACAACCCTGTGAATCAGGTGGGGGTGTGGGGGAGGAATCTGGAGATGGAG
ATGGACTATGAGAAAGATCCAGGAGCTAATAACAAGCACTTGCCGCCATCAAATACCCCAAGCGTCCCCCCTCCTGGAGTTGGTGCCTGA
AA sequence
>Lus10023044 pacid=23170438 polypeptide=Lus10023044 locus=Lus10023044.g ID=Lus10023044.BGIv1.0 annot-version=v1.0
MRLRALIRSTNEVEGRGVSSVAGCHWMFDVAVSAPLFPELNDLVLMGPTLFYSESEDQAKPSQDPSCYMCENGCETPSHLFIICLYAAYFRKTLFPRVVY
PADWDEEISWMVTNFSGRSAASRAANLIWRSMVSHVWKERCQRIFSGACLDKKQLGRKICWEASMVNYLSTPASGGSRGSEAADNPVNQVGVWGRNLEME
MDYEKDPGANNKHLPPSNTPSVPPPGVGA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G18880 RNA-directed DNA polymerase (r... Lus10023044
[exp]
0 1
AT4G37810 unknown protein Lus10007240
[exp]
1.4 0.9557
AT2G26580 YABBY YAB5 YABBY5, plant-specific transcr... Lus10019407
[exp]
3.5 0.9502
AT5G60970 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea... Lus10017856
[exp]
4.6 0.9357
AT1G13290 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIV... Lus10021700
[exp]
6.0 0.9257
AT4G15620 Uncharacterised protein family... Lus10041528
[exp]
7.1 0.9272
AT3G61250 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb d... Lus10027459
[exp]
7.5 0.9209
AT4G01190 ATPIPK10 phosphatidylinositol phosphate... Lus10003028
[exp]
8.1 0.8815
AT2G01770 ATVIT1, VIT1 vacuolar iron transporter 1 (.... Lus10021809
[exp]
11.0 0.9146
AT1G17200 Uncharacterised protein family... Lus10042471
[exp]
12.6 0.9283
Lus10016109
[exp]
13.7 0.8843

Lus10023044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.