Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59030 80 / 2e-19 COPT1 copper transporter 1 (.1) AT2G26975 79 / 3e-19 Ctr copper transporter family (.1) AT5G59040 74 / 3e-17 COPT3 copper transporter 3 (.1) AT3G46900 72 / 1e-16 COPT2 copper transporter 2 (.1) AT2G37925 71 / 5e-16 COPT4 copper transporter 4 (.1) AT5G20650 46 / 7e-07 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032428 [exp] 209 / 2e-70 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1) Lus10021107 [exp] 120 / 1e-35 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 119 / 3e-35 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10016464 [exp] 91 / 1e-23 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10040726 [exp] 80 / 2e-19 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10021108 [exp] 74 / 5e-17 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10017204 [exp] 52 / 2e-09 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10007092 [exp] 52 / 6e-09 AT5G20650 169 / 6e-55 copper transporter 5 (.1) Lus10012501 [exp] 48 / 2e-07 AT5G20650 177 / 5e-58 copper transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093200 [exp] 119 / 4e-35 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.009G038700 [exp] 91 / 8e-24 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093300 [exp] 81 / 3e-20 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.009G038800 [exp] 75 / 1e-17 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.001G246000 [exp] 71 / 5e-16 AT5G59030 134 / 9e-41 copper transporter 1 (.1) Potri.006G140700 [exp] 50 / 3e-08 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 42 / 3e-05 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10023045 pacid=23170334 polypeptide=Lus10023045 locus=Lus10023045.g ID=Lus10023045.BGIv1.0 annot-version=v1.0 ATGCCGATGGGACCAGGGACAATGTCTCCCGGCGGCGGAGACAACAACATGAACATGAACATGAGCATGGACAACGACTACAACATGATGCATAGCAGCT TGTTCTGGGGGAAAGACGCTATAGTCCTCTTCTCCGGATGGCCCAACCACAGCCTACCCATGTACATACTCGCCTGCTTCTTCGTCTTCTCCATGGCCGC TTCGATCGAGCTCCTCAACATCCATAAGCTTCCCACCCGCCCTGTTGTCGAGGCGTGTGTCTATGCCCTGAGGATGACTGTTGCTTACTTGCTCATGCTA TCTGTCATGTCCTTCAATATCGGCATCTTTTTGGCTGCTGTGATCGGCCATTCTGTCGGGATGTTCGTCGCCAAGGTTCGTGCTAATCGTGCGGCTGTGA TGGTCGATGGCCGCCGGATGCCTGACGGAGATGCCAAGATTTGA
AA sequence Show only first row Show all	>Lus10023045 pacid=23170334 polypeptide=Lus10023045 locus=Lus10023045.g ID=Lus10023045.BGIv1.0 annot-version=v1.0 MPMGPGTMSPGGGDNNMNMNMSMDNDYNMMHSSLFWGKDAIVLFSGWPNHSLPMYILACFFVFSMAASIELLNIHKLPTRPVVEACVYALRMTVAYLLML SVMSFNIGIFLAAVIGHSVGMFVAKVRANRAAVMVDGRRMPDGDAKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	0	1
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	3.9	0.7814
					Lus10035468 [exp]	4.2	0.7660
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	4.9	0.8226
AT5G43190			Galactose oxidase/kelch repeat...		Lus10007740 [exp]	7.5	0.8125
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10018344 [exp]	9.2	0.6401
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	10.9	0.7432
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	11.8	0.7812
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	14.5	0.7787
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	15.9	0.7787
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031166 [exp]	16.6	0.7598

Compare expression of checked genes

Lus10023045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.