Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30960 417 / 5e-144 GTP-binding family protein (.1) AT5G66470 87 / 1e-18 RNA binding;GTP binding (.1) AT5G05000 42 / 0.0008 ATTOC34, OEP34, TOC34 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34, translocon at the outer envelope membrane of chloroplasts 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032427 [exp] 690 / 0 AT1G30960 489 / 1e-171 GTP-binding family protein (.1) Lus10014289 [exp] 85 / 9e-18 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 63 / 2e-10 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10004103 [exp] 44 / 0.0002 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 44 / 0.0002 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029578 [exp] 42 / 0.0008 AT1G78010 677 / 0.0 tRNA modification GTPase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160800 [exp] 470 / 8e-165 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.007G021900 [exp] 87 / 2e-18 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.009G017000 [exp] 43 / 0.0004 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10023046 pacid=23170362 polypeptide=Lus10023046 locus=Lus10023046.g ID=Lus10023046.BGIv1.0 annot-version=v1.0 ATGAAATCTTTCCGAGCGATCAGAGCGTTTGCGTCATTCACTGCTCCTCCGCCTTCCAATTCCTTTCTTCGGAATCCAGCTCGTATCCCTCGTTACTTCA CAGCTCAACCCGAACACCACGATAGTGACGCTGGCGACGTCTTTGATAGCAGCCACTACGCCATTCCCGGCATCGATTCTGATGCATCTGTTTCCTCTTC TTCTGACGAACCCACCTGGGATGGGAAGTACAGAGATAGAGCTGATAAGGTGGTGTTTGGGGAAGAAAAACCCCAGAAGAAAGTCAACCTAAAGATTCTG CACGAGGAAGAGGAAGATATGAAGAGGAGAGTGCTGGCGAGAGCTTTACTGGAGGCAGCACTCAAGGGAGACGATGACGAGGAAGAATTGGTGAGGGAAG AAGATCAGAAGTCACTCTCTGTTGGGATTATTGGTGCTCCCAACGCTGGCAAATCCTCGTTGACAAATTACATGGTGGGAACAAAAGTTTCTGCTGTGTC ACGGAAAACCAATACAACTATTCATGAAGTTCTGGGAGTGATGACGAGAGGAGACACCCAAATTTGCCTCTTCGACACTCCTGGTCTCTTGCTAAATGGA CGTGGATATGCTTATCAAGATGCGAGGGCACGTGTTCAAAATGCTTGGAGCTCAATTGGGTTGTATGATGTTCTTGTGGTTATTTTCGATGTTGAGAGAC ACCTAACCAGGCCTGATGCGAGGGTGGTAAAGTTGATAAAAAGATTGGGAGAGCATGAAGATCCAAAACAAAAGAGGGTATTATGCATAAATAAGGTTGA CCTAGTTAAAAAGAAGAAAGAGTTGTTAAAAGTCATGGAGCAATTTAAAGACCTTCCTGCCTATGAAAGGCAATTCTTGATCTCAGGGCTGAAGGGTGTT GGACTGAAGGATCTTACTGAATACTTGATGTCTAAGGCATTCAAAAGGCCGTGGGATGAAGATCCCCTTGAGATGGGTGAGGAACTTATGAAGAACATTT CATTAGAAGTCGTCCGAGAAAGATTATTAGATCATGTTCATCAGGAAATCCCATATAGCATCGAGCATCGGTTGATGGACTGGAAGGAACTAAGGGACGG CTCGCTTAGGATAGAACACCACTTAATCACTAATAAGTTAAGCCAGCGGAAGATCCTCGTCGGCAAGGGGGGCTCCAAAATAGGGAGAATAGGTATAGAA GCTAACGAAGAGCTGAAGTCGATATTCAAGAGGGAAGTGCACCTCATCCTTAAGGTTAAGTTGACAACTTGA
AA sequence Show only first row Show all	>Lus10023046 pacid=23170362 polypeptide=Lus10023046 locus=Lus10023046.g ID=Lus10023046.BGIv1.0 annot-version=v1.0 MKSFRAIRAFASFTAPPPSNSFLRNPARIPRYFTAQPEHHDSDAGDVFDSSHYAIPGIDSDASVSSSSDEPTWDGKYRDRADKVVFGEEKPQKKVNLKIL HEEEEDMKRRVLARALLEAALKGDDDEEELVREEDQKSLSVGIIGAPNAGKSSLTNYMVGTKVSAVSRKTNTTIHEVLGVMTRGDTQICLFDTPGLLLNG RGYAYQDARARVQNAWSSIGLYDVLVVIFDVERHLTRPDARVVKLIKRLGEHEDPKQKRVLCINKVDLVKKKKELLKVMEQFKDLPAYERQFLISGLKGV GLKDLTEYLMSKAFKRPWDEDPLEMGEELMKNISLEVVRERLLDHVHQEIPYSIEHRLMDWKELRDGSLRIEHHLITNKLSQRKILVGKGGSKIGRIGIE ANEELKSIFKREVHLILKVKLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	0	1
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	3.0	0.8924
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	5.5	0.8435
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	13.3	0.8348
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	13.6	0.8255
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	15.5	0.8052
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	19.1	0.7199
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	19.9	0.8128
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	21.2	0.8175
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	24.7	0.8112
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	27.0	0.7840

Compare expression of checked genes

Lus10023046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.