Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10850 198 / 4e-63 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G62850 189 / 1e-59 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT3G28007 174 / 9e-54 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT1G66770 168 / 2e-51 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G40260 158 / 1e-47 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G21460 137 / 2e-39 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT3G14770 122 / 7e-34 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT4G25010 117 / 2e-31 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT5G50800 117 / 3e-31 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G13170 116 / 4e-31 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032426 [exp] 373 / 1e-131 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 288 / 2e-98 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 287 / 7e-98 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 190 / 5e-60 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 177 / 9e-55 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 176 / 3e-54 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 165 / 5e-50 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10022226 [exp] 161 / 6e-49 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10028634 [exp] 139 / 4e-40 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143100 [exp] 237 / 2e-78 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 182 / 4e-57 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 176 / 9e-55 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 139 / 3e-40 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 129 / 2e-36 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 127 / 8e-36 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 125 / 5e-35 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 125 / 8e-35 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 125 / 8e-35 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 125 / 8e-35 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10023047 pacid=23170437 polypeptide=Lus10023047 locus=Lus10023047.g ID=Lus10023047.BGIv1.0 annot-version=v1.0 ATGGGTGTGTTCAGAAATGGGTGTGGGGTGATTGCCCTAAGCCATGACCACCCGCCAACGTTCGTGCAAATATGGAAGAAAGGGTCGGTGGAGCGGTTCA AACCGGACCCGTACCTGGCGACAGTGATGAACTGCATGGTGTGGGTGGTGTACGGTCTCCCCATGTTCCACAAGGACAGCACTTTAGTCCTCACAATCAA CGGCGCAGGGACGGCCATCCAGTTGGTGTACATAGCACTCTTCCTCATCTACTCCGACAAGAAGAAGCGGGTCAAGGTCCTCTCCATCCTCTTGCTCGAA ATAGCCTTCGTAGTCGCGCTCCTCCTCCTCCTCGCCTTCCTCGTGCACCCCATCGAGAAGCGCGGCTTCATCGTCGGCGTCTTCTGCATCGTCTTCTGTA TCATGATCTACCTCGCTCCCCTCTCTGTCATGAAACTGGTGATGAAGACAAAGAGCGTGGAGTACATGCCGTTTTACCTATCCTTGGCCTCCTTAGCCAA CGGCGCTTGCTGGACAGCTTACGCCTTGATCAAAATCGAGTGGTTCATTATTATACCGAATGGAGTAGGACTATTGCTGGCGATGGGGCAGCTTGCACTG TACGCCGCATTCTACAAATCGACGCAGAGGCAGATTGCAGAGAGGAAAGCGGCGGAGAAAGGCGGAGCCGCTACTGGGGAGCTGAATCTGTCGCAGGTGG GTGTTGTTGTTGTGGATAGAGACGAAGATGCTGCTCATGTCAAGAAAGCTGCACGCAACGGCGCCGTATAG
AA sequence Show only first row Show all	>Lus10023047 pacid=23170437 polypeptide=Lus10023047 locus=Lus10023047.g ID=Lus10023047.BGIv1.0 annot-version=v1.0 MGVFRNGCGVIALSHDHPPTFVQIWKKGSVERFKPDPYLATVMNCMVWVVYGLPMFHKDSTLVLTINGAGTAIQLVYIALFLIYSDKKKRVKVLSILLLE IAFVVALLLLLAFLVHPIEKRGFIVGVFCIVFCIMIYLAPLSVMKLVMKTKSVEYMPFYLSLASLANGACWTAYALIKIEWFIIIPNGVGLLLAMGQLAL YAAFYKSTQRQIAERKAAEKGGAATGELNLSQVGVVVVDRDEDAAHVKKAARNGAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	0	1
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	1.4	1.0000
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	1.7	0.9987
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	2.0	1.0000
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	2.4	0.9965
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	2.6	0.9962
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	3.0	0.9913
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	3.5	0.9986
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	3.9	0.9978
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	4.0	0.9961
AT4G05130		ATENT4	equilibrative nucleoside trans...		Lus10002590 [exp]	4.1	0.9335

Compare expression of checked genes

Lus10023047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.