Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64530 775 / 0 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 663 / 0 NLP7 NIN like protein 7 (.1) AT1G76350 432 / 1e-139 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 375 / 2e-117 NLP4 Plant regulator RWP-RK family protein (.1.2) AT2G17150 344 / 4e-105 NLP1 Plant regulator RWP-RK family protein (.1.2) AT3G59580 342 / 8e-105 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 338 / 7e-103 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G38340 291 / 1e-86 NLP3 Plant regulator RWP-RK family protein (.1) AT4G35270 278 / 1e-80 NLP2 Plant regulator RWP-RK family protein (.1) AT4G35590 51 / 2e-06 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003199 [exp] 832 / 0 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10001811 [exp] 610 / 0 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10032423 [exp] 552 / 0 AT1G64530 323 / 6e-101 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 377 / 8e-120 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 382 / 1e-119 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 380 / 4e-119 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 364 / 1e-113 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10013224 [exp] 361 / 1e-113 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 359 / 7e-112 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087900 [exp] 726 / 0 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 721 / 0 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 404 / 1e-127 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 384 / 3e-120 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 368 / 7e-114 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 366 / 5e-113 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 362 / 1e-111 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 362 / 3e-111 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 357 / 2e-109 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166666 [exp] 356 / 2e-109 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10023049 pacid=23170320 polypeptide=Lus10023049 locus=Lus10023049.g ID=Lus10023049.BGIv1.0 annot-version=v1.0 ATGACTGAGCTGCGCCGTACCCTTTTGATCACTTCTCCGGTGACATCCGGCGCAGACAGCCAAGAGCCATTGATGATGGAGCTCGATTTTGATCTCTACA GTTCATCCTGGCCGTTGGATCAATTCTCTATCCCTCCAAGTCATCCAACGTCTCCCCTTTTCCTCTCCAACTCTGACTACTCCCAGCCTTGTTCCCCTCT TTGGTCATTCTCCGCCGCCGCCGACGATGACGATGACGACAACTCGCCTCCCTCCGTCGCCGCCGCTGTTCGTGATTACCCACTCTTCATCACATGTAAC CTTAAATCAATGCCATTTCCAATCGATAGCTCAGATGGGCATTGTTCGATCAAAGAGCGAATGACACGAGCTCTTAGATATTTAAAACAGTCAACGGATC AACAAAACATTCTAGCTCAAATTTGGGCGCCTGTGAAGAAGATTGGAGGAAGTCGATTTGTTCTGACGACTTCGGAGCAACCATTTGTGCTTGATCCTCA CTGCAATGGGCTTAATCAGTATAGGATGGTCTCTCTTTTGTACACATTCTCCGTGGATGATGATGAAGAGACTGATGGAGTAGCAGGAGATTATCAGCTG GGGCTTCCGGGTCGGGTTTTCCACCGGAAGTTGCCTGAATGGACTCCTAATGTTCAGTATTACTCTAGCAAAGAGTACTCAAGGCTTGACCATGCTTTGC ACTATAACGTCCGAGGAAGTCTGGCTTTGCCAGTTTTCCAAACTGATTCCGGTCGGGAGTCGTCGCCGTGTGTTGGTGTGATTGAGCTTGTGATGACTTC CCAGGTTGTGAATTATGGTCCTGAGGTTGATAAAGTCTGCAAGGCTCTTCAGGCAGTGAATCTGAAGAGCTCTGAAGTATTGGACCACGGGAAACCACAG ATTTGTAACGAAGGTCGGCAGAATGCACTGGCCGAGATCCAAGAGATATTGACACTACTGTGCGAGACCCACGGTTTGCCTTTAGCTCAAGCTTGGGTTC CATGCATGCACCGTTGCGTTCTGGCTAACGGTGGCGGTGTGAAGAAGACCTGCACAAGCTTTGATGGAAACTGCAATGGCAAAGTCTGTATGTCCACAAC TGATCGAGCCTTCTACGTCGCAGATTCTCAAGTTTGGGGGTTTCGCCAAGCCTGCATCGAACACCATTTGCAGACTGGCCAGGGTGTTTCTGGGAGGGCT TTCTCGTCTCGAGGTGCTTGTTTCTGCAGGGACATTACTAACTTCTGCAAGACTCAGTACCCTTTGGTGCATTACGCTCGAATGTTTGGATTGAAGGGTA GCTTCGCAATCTGCTTGAAGAGCAGCCACACTGGCGACGATGTTTACGTTCTCGAGTTCTTTCTGAATATTGTTGAGGGTTTTGAACAGAATACAAGGGT GTTGGGATCTTTGTTGGACACAATGCAGCAGCATTTCCAGAGTCTTGCAGTTGCATTATCGGGGATTCAAGAGGAGGAAGGAGGATTGTCTGTTGAGATT GTTGAAGCTTCAGAGGGTGGAAAGCTCGATTTCATTGTTGAACATGTTCGAGTAGTTCCATGTTCTTTAGATTCTTTGCCAAAGGAAGTGGGGATTGTGC AGCCAACTGTGGAATTGGATACTACTGTTGATAATCAATCAAATTGCAGTAATGAGCCAAAGAATCTTCGTCCATCGAAGAAGAAGCGAGGGAAGACTGA AATATCAATCAGCCTAGAGGTTCTGCAACGGCATTTTTCTGGGAGTCTTAAAGATGCTTCTAAAAGCCTTGGTGTTTGCCCTACTACAATGAAGCGGATA TGCAGGCATCATGGGATCTCCAGGTGGCCATCTCGCAAGATCAACAAGGTGAACAGATCCCTCACGAAGCTACAGAAGGTGATCGAATCCGTTCGAGTTG TTCCTCCCGATTCATCATTTCACTTGGCACAAGATTTGACGAAATCAGGCAACTCTACTTCTCATGGTTCATGTGAAGGCTGCCCTGCTGCAACAAATGA AAGCGACCCTTCAAAGGACCGCCCTTTGAGTTCTGCTTCCCCAATTCGAGACCACAAAGATAAGAGTGTGATCATAAAGGCGACGTACAAACAAGACATG ATAAGATTCAGGATCGGGACGAGGTGTGGGATGATGGAGCTGAAGGAGGAAGTTGGGAAGAGGTTGAAGTTAGAAGTTGGTCTTTTCGAGGTTAAGTATT TTGATGATGACAATGAGTGGGTTAAGATAGTTTGTGATGCTGACCTTCAGGAGTGCATCGACATCACAAGCAGTTATAACATAGTGAGGATGTCGATTCA TGAAGTTGCTGCCAAATTTGGGAGCTCCTGTGAAAGCAGAGTTGGCAGAGTTTGTTATGATGACAAGCTAGCTATAGTTTAA
AA sequence Show only first row Show all	>Lus10023049 pacid=23170320 polypeptide=Lus10023049 locus=Lus10023049.g ID=Lus10023049.BGIv1.0 annot-version=v1.0 MTELRRTLLITSPVTSGADSQEPLMMELDFDLYSSSWPLDQFSIPPSHPTSPLFLSNSDYSQPCSPLWSFSAAADDDDDDNSPPSVAAAVRDYPLFITCN LKSMPFPIDSSDGHCSIKERMTRALRYLKQSTDQQNILAQIWAPVKKIGGSRFVLTTSEQPFVLDPHCNGLNQYRMVSLLYTFSVDDDEETDGVAGDYQL GLPGRVFHRKLPEWTPNVQYYSSKEYSRLDHALHYNVRGSLALPVFQTDSGRESSPCVGVIELVMTSQVVNYGPEVDKVCKALQAVNLKSSEVLDHGKPQ ICNEGRQNALAEIQEILTLLCETHGLPLAQAWVPCMHRCVLANGGGVKKTCTSFDGNCNGKVCMSTTDRAFYVADSQVWGFRQACIEHHLQTGQGVSGRA FSSRGACFCRDITNFCKTQYPLVHYARMFGLKGSFAICLKSSHTGDDVYVLEFFLNIVEGFEQNTRVLGSLLDTMQQHFQSLAVALSGIQEEEGGLSVEI VEASEGGKLDFIVEHVRVVPCSLDSLPKEVGIVQPTVELDTTVDNQSNCSNEPKNLRPSKKKRGKTEISISLEVLQRHFSGSLKDASKSLGVCPTTMKRI CRHHGISRWPSRKINKVNRSLTKLQKVIESVRVVPPDSSFHLAQDLTKSGNSTSHGSCEGCPAATNESDPSKDRPLSSASPIRDHKDKSVIIKATYKQDM IRFRIGTRCGMMELKEEVGKRLKLEVGLFEVKYFDDDNEWVKIVCDADLQECIDITSSYNIVRMSIHEVAAKFGSSCESRVGRVCYDDKLAIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10023049 [exp]	0	1
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	15.1	0.7376
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10001024 [exp]	19.4	0.7112
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	20.4	0.7097
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	32.4	0.6847
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	32.9	0.7062
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	48.4	0.6559
AT4G16100			Protein of unknown function (D...		Lus10016841 [exp]	65.7	0.6753
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004029 [exp]	95.4	0.6162
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	98.3	0.6085
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	114.2	0.6549

Compare expression of checked genes

Lus10023049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.