Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63610 699 / 0 HEN3, CDKE;1, CDK8, ATCDK8 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) AT1G67580 253 / 3e-76 CDKG;2 Protein kinase superfamily protein (.1.2) AT3G48750 240 / 4e-76 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT5G63370 230 / 4e-70 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G73690 224 / 1e-68 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 222 / 5e-68 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G20930 219 / 9e-68 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G54180 219 / 1e-67 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT2G38620 218 / 2e-67 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G66750 219 / 3e-67 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032422 [exp] 891 / 0 AT5G63610 707 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Lus10015816 [exp] 258 / 6e-78 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 258 / 6e-78 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040530 [exp] 223 / 6e-68 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10017371 [exp] 220 / 4e-67 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10021611 [exp] 217 / 6e-67 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 216 / 1e-66 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 204 / 1e-62 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10026790 [exp] 210 / 4e-62 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088000 [exp] 750 / 0 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.003G142900 [exp] 749 / 0 AT5G63610 676 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.004G133500 [exp] 246 / 2e-78 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 258 / 6e-78 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 242 / 3e-72 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 239 / 3e-71 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 236 / 9e-71 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G142800 [exp] 226 / 2e-70 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 221 / 1e-68 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.006G113200 [exp] 221 / 2e-68 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023050 pacid=23170426 polypeptide=Lus10023050 locus=Lus10023050.g ID=Lus10023050.BGIv1.0 annot-version=v1.0 ATGGGGGATGGAAGCAACAGTCGAAACGTTTCAGGCAGTGGTGGCCACAGGGAGAAGCCAGAGTGGCTGCAGCAGTACAATCTCATCGGCAAGATAGGCG AAGGCACTTACGGTCTCGTATTCTTAGCGAAAACCAAGTCTCCGGCGAATCGCGGCAAATCAATCGCCATCAAGAAGTTCAAGCAGTCCAAAGACGGTGA TGGGGTCTCCCCTACCGCCATCCGTGAGATCATGTTGCTCCGCGAGATAACTCACGAGAACGTCGTAAAGCTTGTGAATGTGCACATTAACCACAATGAT ATGTCGCTCTATCTGGCTTTCGATTATGCCGAGCACGACCTCTACGAAATCATCAGGCACCATAGAGAGAAGCTCAACCATCCGATTAATCAGTACACGG TGAAATCGATTCTCTGGCAGCTTCTCAACGGTCTGAACTATCTGCACTGCAATTGGATCATACACAGAGATCTCAAGCCTTCCAATATCCTCGTAATGGG AGATGGAGAAGAACACGGCATGGTCAAAATCGCCGATTTCGGTCTCGCCAGGATTCATCAAGCCCCGTTGAAGCCGTTATCTGATAACGGCGTTGTGGTA ACAATCTGGTATCGTGCGCCCGAGCTGCTTCTCGGGGCGAAGCATTACACGAGTGCTGTCGATATGTGGGCTATCGGATGCATTTTTGCCGAGCTTTTGA CTTTGAAGCCGCTGTTTCAAGGTACGGAGGCTAAATCTACGCCGAATCCTTTCCAGCTCGATCAGCTTGACAAGATATTCAAGGTATTAGGGCATCCCAC GCAGGATAAATGGCCGACACTTGCGAATCTACCACATTGGCAATCGGATCTTCAGCATATCCAGGGGCATAAGTACGACACTAACGCTCTCCACAGCGTT GTACATCTCTCTCCGAAGAGTATTCCGTTCGATCTCTTGTCTAAGATGCTTGTTTACGATCCTTTGAAGAGGATAACAGCGGCGCAAGCTCTGGAGCACG AGTATTTCCGGATGGAGCCCTTGGCGGGACGGAATGCTCTTGTGCCGTCTCAGCCTGGCGAGAAGGTGATCAATTACCCGACTCGGCCGGTTGATTCGAA CACGGATTTTGAGGGAACGACTAGCCTTCAACCTCCGCAACAGATGGTTGCTGGAATGGGGAGCCGAGGTGGTCCGAGACCTATGCACATGGGAATGCAG AGAATGCAACCTCAGGGTATGGCGGCTTATAATCTCCAGTCTCAGGGTGGGATGGCGGGGATGAATCCAGGAGGAATGCCAATGACTCGGGGTGTTGCTC AGGGTCACCAGCAGCATCCGCATCTGAGAAGGAAAGATCCACCGATGGGAACTGGGTATCCTCCACAGCAGAAGTCCAGACGCCAATGA
AA sequence Show only first row Show all	>Lus10023050 pacid=23170426 polypeptide=Lus10023050 locus=Lus10023050.g ID=Lus10023050.BGIv1.0 annot-version=v1.0 MGDGSNSRNVSGSGGHREKPEWLQQYNLIGKIGEGTYGLVFLAKTKSPANRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHND MSLYLAFDYAEHDLYEIIRHHREKLNHPINQYTVKSILWQLLNGLNYLHCNWIIHRDLKPSNILVMGDGEEHGMVKIADFGLARIHQAPLKPLSDNGVVV TIWYRAPELLLGAKHYTSAVDMWAIGCIFAELLTLKPLFQGTEAKSTPNPFQLDQLDKIFKVLGHPTQDKWPTLANLPHWQSDLQHIQGHKYDTNALHSV VHLSPKSIPFDLLSKMLVYDPLKRITAAQALEHEYFRMEPLAGRNALVPSQPGEKVINYPTRPVDSNTDFEGTTSLQPPQQMVAGMGSRGGPRPMHMGMQ RMQPQGMAAYNLQSQGGMAGMNPGGMPMTRGVAQGHQQHPHLRRKDPPMGTGYPPQQKSRRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	0	1
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	2.6	0.8161
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	5.7	0.8102
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	8.4	0.7932
AT2G13690			PRLI-interacting factor, putat...		Lus10020892 [exp]	8.7	0.7942
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	10.2	0.7650
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	13.1	0.8092
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030869 [exp]	15.5	0.7770
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	17.0	0.7684
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	18.5	0.7819
AT5G13970			unknown protein		Lus10035116 [exp]	18.5	0.7697

Compare expression of checked genes

Lus10023050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.