Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24310 101 / 1e-26 ABIL3 ABL interactor-like protein 3 (.1.2) AT3G49290 102 / 2e-26 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G42030 82 / 6e-19 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 80 / 5e-18 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032421 [exp] 206 / 4e-67 AT3G49290 171 / 2e-51 ABL interactor-like protein 2 (.1.2) Lus10005919 [exp] 107 / 3e-28 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10002151 [exp] 89 / 2e-21 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10008737 [exp] 86 / 4e-20 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10022393 [exp] 64 / 3e-12 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10043223 [exp] 53 / 2e-08 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 53 / 2e-08 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10034928 [exp] 47 / 5e-07 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10023654 [exp] 48 / 9e-07 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142800 [exp] 110 / 9e-30 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.001G088100 [exp] 108 / 7e-29 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.012G016900 [exp] 102 / 3e-26 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.002G165900 [exp] 82 / 8e-19 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.014G092300 [exp] 76 / 7e-17 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 42 / 6e-05 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023052 pacid=23170351 polypeptide=Lus10023052 locus=Lus10023052.g ID=Lus10023052.BGIv1.0 annot-version=v1.0 ATGGATATCAAGAGCAGCTCATCATCTTCCAAGCTGTATGGAGGTGCAACCTCAGATGAACATCTCATGCTGCAGAAAACACTCTTCTCTGCCACTCTCA AGCTGAACATTTTGAAGAGTCTTACAGCAGAGAAGACCATAAACCAATGCAAGTCGTCTCAGATGAAAAACATATACCACTTACAACTAACACTTATGAA ACCTTCTTCTGAAGTCTGTTCCTTTCTATGCAGGGTGATTGAAACATGCAAGGACTACGCCATTAAAGCACTGATCAATACAGTCGACCACTTGGGTTCC GTGGCATTCAAGCTCAACAGATACATCGACCACACAACTTGTGAAGTTGCTTCAATGGACCTCAGAGTCTATTCCATGGACCAGAGATTGAAAACTTGCC AACATTACATAAACCAAGGAGGGATGTATCAGAACTCTCTATCGTTCACAACTCCACATCAGTACCACAAACAGTACATAATTCCAGGCATAAAAAGAAA CAAGTTTTGCTTTGTCACATAG
AA sequence Show only first row Show all	>Lus10023052 pacid=23170351 polypeptide=Lus10023052 locus=Lus10023052.g ID=Lus10023052.BGIv1.0 annot-version=v1.0 MDIKSSSSSSKLYGGATSDEHLMLQKTLFSATLKLNILKSLTAEKTINQCKSSQMKNIYHLQLTLMKPSSEVCSFLCRVIETCKDYAIKALINTVDHLGS VAFKLNRYIDHTTCEVASMDLRVYSMDQRLKTCQHYINQGGMYQNSLSFTTPHQYHKQYIIPGIKRNKFCFVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10023052 [exp]	0	1
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	1.0	0.8265
AT3G25400			unknown protein		Lus10003475 [exp]	3.5	0.7099
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	6.0	0.7438
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10003013 [exp]	13.3	0.6524
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	14.1	0.6748
					Lus10021578 [exp]	23.5	0.6936
AT2G27830			unknown protein		Lus10015082 [exp]	26.1	0.6503
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10036628 [exp]	27.0	0.7069
					Lus10026168 [exp]	30.7	0.6786
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	33.9	0.6860

Compare expression of checked genes

Lus10023052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.