Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64520 339 / 8e-119 RPN12A regulatory particle non-ATPase 12A (.1) AT5G42040 211 / 5e-69 RPN12B regulatory particle non-ATPase 12B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032420 [exp] 447 / 3e-162 AT1G64520 340 / 2e-119 regulatory particle non-ATPase 12A (.1) Lus10001813 [exp] 320 / 1e-112 AT1G64520 283 / 2e-97 regulatory particle non-ATPase 12A (.1) Lus10003197 [exp] 316 / 4e-109 AT1G64520 335 / 5e-116 regulatory particle non-ATPase 12A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142700 [exp] 368 / 3e-130 AT1G64520 427 / 5e-153 regulatory particle non-ATPase 12A (.1) Potri.001G088200 [exp] 362 / 4e-128 AT1G64520 414 / 5e-148 regulatory particle non-ATPase 12A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10023053 pacid=23170321 polypeptide=Lus10023053 locus=Lus10023053.g ID=Lus10023053.BGIv1.0 annot-version=v1.0 ATGGATCCGAAGCTGACGGAAGTGTCACAGTCCTTTGAACGATTCAAATCGGCTTGTGTGAGGGGGGATATCGATACCTCTGCGAATCTTCTTTCTCAGC TAAAGGTCTTGTTAACTAGCTTCAGAAGCCTTCCGCCTTTGTTTGAAGCTACGCCGAATGCTGTCCAAGAATTGACATTAGCGAGAGATATATATGAGCA TGCAGTTCTTCTTAGTGTTAAGATGGGGGATCAGGATGCGTTTGAAAGGGACTTCTTTCAGTTGAAGCCATACTATACGGATGCCGGTAGTCGACTATCC CCATCTCCTCGAGAACATATGATACTGGGCCTCAACCTATTGAGACTCCTAGTGCAGAATAGAATTGCCGAGTTCCACACTGAACTAGAGCTGCTCCCTG CCAGCTCTCTGGAGGATCCATGCATAAAGCATGCCGTGGAGTTGGAGCAGTCATTCATGGAGGGGGCATACAACCGGGTGTTGACTGCAAAACAAACTGT TCCATACAAGGACTATGACTACTTCATGGATCTCTTGGCGAAGACGGAGCATCCAGAGTGGGAAACAAAAGATGGGTTCGTCGTCTTCCAGAAGGCAAAG GAATCTGCCCCGTGCAAGGAGATACCGTCTCTGCAGCTCATTAACCAGACACTCAGCTATGCTCGAGAGTTGGAGCGGATTGTGTAG
AA sequence Show only first row Show all	>Lus10023053 pacid=23170321 polypeptide=Lus10023053 locus=Lus10023053.g ID=Lus10023053.BGIv1.0 annot-version=v1.0 MDPKLTEVSQSFERFKSACVRGDIDTSANLLSQLKVLLTSFRSLPPLFEATPNAVQELTLARDIYEHAVLLSVKMGDQDAFERDFFQLKPYYTDAGSRLS PSPREHMILGLNLLRLLVQNRIAEFHTELELLPASSLEDPCIKHAVELEQSFMEGAYNRVLTAKQTVPYKDYDYFMDLLAKTEHPEWETKDGFVVFQKAK ESAPCKEIPSLQLINQTLSYARELERIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	0	1
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	3.6	0.7584
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	5.3	0.7261
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10016647 [exp]	6.0	0.7012
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	6.9	0.7170
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10041890 [exp]	7.1	0.7306
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	7.7	0.6943
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	15.9	0.6692
AT3G48490			unknown protein		Lus10014788 [exp]	17.0	0.6591
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	19.2	0.7183
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	20.8	0.7144

Compare expression of checked genes

Lus10023053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.